MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.6 nTPM
HPA Brain:27.3 nTPM
GTEx:17.6 nTPM
FANTOM5:31.7 Scaled Tags Per Million
Pig:24.1 nTPM
Mouse:32.6 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.5
2411 Female, age 72, unknown 24.4
2019 Male, age 18, unknown 23.3
2666 Male, age 74, left hemisphere 22.3
1827 Male, age 72, unknown 21.1
2586 Male, age 75, left hemisphere 20.7
2219 Male, age 76, both hemispheres 19.3
1833 Male, age 53, unknown 18.8
2828 Female, age 72, unknown 18.7
1870 Female, age 42, unknown 18.5
1830 Male, age 51, unknown 18.2
Dorsal raphe nucleus
nTPM: 24.7
2047 Male, age 72, unknown 26.2
2750 Male, age 76, both hemispheres 25.9
1828 Male, age 53, unknown 25.4
2298 Female, age 72, unknown 25.3
2016 Female, age 72, unknown 20.7
Inferior colliculus
nTPM: 19.9
2097 Female, age 72, unknown 24.5
1890 Male, age 53, unknown 21.3
1848 Female, age 42, unknown 17.9
2849 Male, age 72, unknown 16.0
Median raphe nucleus
nTPM: 27.3
2220 Male, age 76, midline 27.3
Periaquaductal grey, anterior
nTPM: 22.6
1947 Male, age 18, unknown 23.8
2502 Female, age 75, unknown 22.3
1795 Male, age 51, unknown 21.6
Periaquaductal grey, dorsal
nTPM: 18.6
2464 Female, age 72, unknown 21.4
1840 Male, age 53, unknown 18.5
1831 Male, age 72, unknown 17.4
2850 Male, age 76, both hemispheres 16.9
Periaquaductal grey, lateral
nTPM: 18.1
2272 Male, age 74, both hemispheres 19.4
2140 Male, age 76, both hemispheres 17.7
2053 Male, age 18, unknown 17.2
Pretectal area
nTPM: 21.2
1944 Female, age 72, unknown 24.5
2007 Male, age 72, unknown 24.5
1816 Male, age 51, unknown 24.4
1817 Female, age 42, unknown 22.8
2667 Female, age 75, unknown 22.7
2224 Female, age 72, unknown 20.7
2273 Male, age 74, both hemispheres 20.1
1815 Male, age 53, unknown 20.0
2825 Male, age 18, unknown 18.7
2316 Male, age 76, right hemisphere 17.9
2407 Male, age 75, both hemispheres 17.4
Red nucleus
nTPM: 20.4
2725 Female, age 75, unknown 23.0
1821 Female, age 72, unknown 22.4
2503 Female, age 72, unknown 21.5
1904 Male, age 53, unknown 21.2
2785 Male, age 18, unknown 20.7
1954 Female, age 42, unknown 20.5
2588 Male, age 74, left hemisphere 19.7
2769 Male, age 72, unknown 19.7
2227 Male, age 72, unknown 19.6
1865 Male, age 51, unknown 19.3
2584 Male, age 75, left hemisphere 18.8
2823 Male, age 76, right hemisphere 18.8
Substantia nigra
nTPM: 26.1
1916 Female, age 42, unknown 37.4
2241 Male, age 72, unknown 33.3
1851 Male, age 51, unknown 30.3
2409 Female, age 72, unknown 29.5
1941 Male, age 53, unknown 24.8
1889 Female, age 72, unknown 23.4
2590 Female, age 75, unknown 21.5
2699 Male, age 18, unknown 21.5
2665 Male, age 74, both hemispheres 20.7
2583 Male, age 75, right hemisphere 18.6
Superior colliculus
nTPM: 19.4
2087 Female, age 72, unknown 22.2
2261 Male, age 18, unknown 22.2
1913 Female, age 42, unknown 20.9
1796 Male, age 53, unknown 20.3
2587 Male, age 74, left hemisphere 19.7
1895 Male, age 76, right hemisphere 19.2
2668 Female, age 75, unknown 19.0
1839 Male, age 51, unknown 18.3
1995 Male, age 72, unknown 16.2
2664 Male, age 75, both hemispheres 15.6
Ventral tegmental area
nTPM: 24.4
2410 Female, age 72, unknown 27.8
1915 Female, age 42, unknown 26.4
2218 Male, age 76, both hemispheres 26.4
2021 Male, age 53, unknown 23.2
1942 Male, age 51, unknown 23.0
2223 Female, age 72, unknown 19.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.6
Samples: 183

Max nTPM: 31.3
Min nTPM: 8.2
Std nTPM: 4.6
Median nTPM: 16.9
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 31.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 30.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 29.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 29.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 29.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 29.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 29.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 28.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 28.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 26.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 26.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.7
FF:10158-103A5 76 years, female 31.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.1
Samples: 4

Max nTPM: 27.8
Min nTPM: 17.3
Sample A Female 27.2
Sample B Female 24.2
Sample C Male 27.8
Sample D Male 17.3
Midbrain
nTPM: 21.8
Samples: 4

Max nTPM: 23.7
Min nTPM: 18.0
Sample A Female 22.6
Sample B Female 22.9
Sample C Male 23.7
Sample D Male 18.0
Periaqueductal gray
nTPM: 21.4
Samples: 3

Max nTPM: 24.5
Min nTPM: 17.4
Sample B Female 22.2
Sample C Male 24.5
Sample D Male 17.4
Superior colliculi
nTPM: 22.7
Samples: 4

Max nTPM: 26.7
Min nTPM: 19.0
Sample A Female 22.6
Sample B Female 26.7
Sample C Male 22.3
Sample D Male 19.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.5
Samples: 4

Max nTPM: 36.1
Min nTPM: 31.0
Sample A Male 36.1
Sample B Male 31.0
Sample C Female 31.2
Sample D Female 31.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
1537 Antisense, RP_040420_01_C09, Mouse strain C57BL/6J (56 days, male) 1.1
1536 Antisense, RP_040420_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1

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