MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.3 nTPM
HPA Brain:50.5 nTPM
GTEx:17.3 nTPM
FANTOM5:87.3 Scaled Tags Per Million
Pig:64.3 nTPM
Mouse:50.5 nTPM
Allen mouse:4.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 50.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.3
2019 Male, age 18, unknown 62.4
2586 Male, age 75, left hemisphere 54.3
2666 Male, age 74, left hemisphere 51.3
2828 Female, age 72, unknown 48.3
1870 Female, age 42, unknown 47.2
2411 Female, age 72, unknown 46.4
1827 Male, age 72, unknown 46.0
1833 Male, age 53, unknown 40.7
1830 Male, age 51, unknown 40.0
2219 Male, age 76, both hemispheres 36.2
Dorsal raphe nucleus
nTPM: 41.1
2750 Male, age 76, both hemispheres 47.9
1828 Male, age 53, unknown 42.1
2016 Female, age 72, unknown 41.3
2047 Male, age 72, unknown 38.1
2298 Female, age 72, unknown 36.3
Inferior colliculus
nTPM: 45.6
1890 Male, age 53, unknown 59.6
2097 Female, age 72, unknown 49.2
1848 Female, age 42, unknown 37.4
2849 Male, age 72, unknown 36.1
Median raphe nucleus
nTPM: 42.4
2220 Male, age 76, midline 42.4
Periaquaductal grey, anterior
nTPM: 38.8
2502 Female, age 75, unknown 43.0
1795 Male, age 51, unknown 40.6
1947 Male, age 18, unknown 32.8
Periaquaductal grey, dorsal
nTPM: 38.9
1831 Male, age 72, unknown 47.4
2464 Female, age 72, unknown 40.7
1840 Male, age 53, unknown 34.6
2850 Male, age 76, both hemispheres 33.0
Periaquaductal grey, lateral
nTPM: 35.2
2053 Male, age 18, unknown 40.3
2272 Male, age 74, both hemispheres 33.5
2140 Male, age 76, both hemispheres 31.7
Pretectal area
nTPM: 50.5
1816 Male, age 51, unknown 68.1
1817 Female, age 42, unknown 65.4
2007 Male, age 72, unknown 62.9
1944 Female, age 72, unknown 60.9
1815 Male, age 53, unknown 59.5
2407 Male, age 75, both hemispheres 49.6
2667 Female, age 75, unknown 44.5
2316 Male, age 76, right hemisphere 38.4
2224 Female, age 72, unknown 37.4
2273 Male, age 74, both hemispheres 37.2
2825 Male, age 18, unknown 32.1
Red nucleus
nTPM: 49.1
2785 Male, age 18, unknown 60.0
1821 Female, age 72, unknown 53.5
1865 Male, age 51, unknown 51.5
2584 Male, age 75, left hemisphere 51.2
1954 Female, age 42, unknown 50.2
1904 Male, age 53, unknown 49.9
2503 Female, age 72, unknown 49.3
2823 Male, age 76, right hemisphere 47.8
2588 Male, age 74, left hemisphere 47.5
2227 Male, age 72, unknown 45.8
2769 Male, age 72, unknown 45.4
2725 Female, age 75, unknown 37.1
Substantia nigra
nTPM: 47.2
2583 Male, age 75, right hemisphere 60.7
1889 Female, age 72, unknown 55.4
2665 Male, age 74, both hemispheres 54.8
2590 Female, age 75, unknown 46.8
1916 Female, age 42, unknown 44.4
1851 Male, age 51, unknown 44.3
2409 Female, age 72, unknown 43.7
2241 Male, age 72, unknown 43.3
2699 Male, age 18, unknown 41.1
1941 Male, age 53, unknown 37.2
Superior colliculus
nTPM: 49.8
2668 Female, age 75, unknown 63.4
1913 Female, age 42, unknown 57.4
2087 Female, age 72, unknown 54.5
2261 Male, age 18, unknown 52.7
2664 Male, age 75, both hemispheres 52.5
1995 Male, age 72, unknown 51.9
1796 Male, age 53, unknown 46.7
2587 Male, age 74, left hemisphere 43.1
1839 Male, age 51, unknown 38.2
1895 Male, age 76, right hemisphere 37.0
Ventral tegmental area
nTPM: 44.9
2223 Female, age 72, unknown 50.0
1942 Male, age 51, unknown 45.7
2410 Female, age 72, unknown 45.7
2218 Male, age 76, both hemispheres 44.2
2021 Male, age 53, unknown 44.1
1915 Female, age 42, unknown 39.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.3
Samples: 183

Max nTPM: 31.7
Min nTPM: 7.9
Std nTPM: 4.1
Median nTPM: 17.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 31.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 29.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 29.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 25.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 25.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 24.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 24.7
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 24.4
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 24.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 24.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 24.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 87.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.3
FF:10158-103A5 76 years, female 87.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 64.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 51.9
Samples: 4

Max nTPM: 55.3
Min nTPM: 49.3
Sample A Female 52.3
Sample B Female 49.3
Sample C Male 50.6
Sample D Male 55.3
Midbrain
nTPM: 64.3
Samples: 4

Max nTPM: 84.1
Min nTPM: 46.7
Sample A Female 78.5
Sample B Female 47.8
Sample C Male 84.1
Sample D Male 46.7
Periaqueductal gray
nTPM: 47.7
Samples: 3

Max nTPM: 50.6
Min nTPM: 43.4
Sample B Female 50.6
Sample C Male 49.0
Sample D Male 43.4
Superior colliculi
nTPM: 63.8
Samples: 4

Max nTPM: 83.5
Min nTPM: 52.8
Sample A Female 59.5
Sample B Female 52.8
Sample C Male 83.5
Sample D Male 59.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 50.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.5
Samples: 4

Max nTPM: 56.6
Min nTPM: 43.3
Sample A Male 43.3
Sample B Male 49.6
Sample C Female 56.6
Sample D Female 52.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
71016630 Antisense, RP_050725_03_A11, Mouse strain C57BL/6J (56 days, male) 5.1
68667156 Antisense, RP_050201_01_G01, Mouse strain C57BL/6J (56 days, male) 4.6

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