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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • STRUCTURE

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  • RPS3A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:915.2 nTPM
FANTOM5:31.3 Scaled Tags Per Million
Pig:309.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA047100
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

915.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 915.2
Samples: 300

Max nTPM: 2896.1
Min nTPM: 487.8
Std nTPM: 308.1
Median nTPM: 857.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 2896.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2604.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2115.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1962.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1913.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1853.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1853.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1805.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1787.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1608.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1562.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1561.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1536.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1518.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1497.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1489.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1435.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1426.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1415.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1406.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1389.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1370.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1340.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1327.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1300.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1300.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1296.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1273.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1246.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1244.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1233.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1229.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1228.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1216.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1202.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1167.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1151.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1147.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1143.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1142.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1135.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1130.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1127.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1118.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1118.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1118.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1114.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1099.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1094.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1094.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1093.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1090.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1080.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1079.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1076.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1075.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1071.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1071.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1071.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1066.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1061.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1061.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1060.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1056.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1055.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1054.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1052.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1052.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1046.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1044.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1043.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1042.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1041.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1041.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1033.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1027.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1022.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1020.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1019.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1019.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1019.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1018.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1012.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1012.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 1012.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1002.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1002.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1001.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 995.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 994.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 994.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 994.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 989.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 979.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 979.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 978.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 974.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 973.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 967.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 967.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 966.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 965.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 964.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 961.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 959.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 957.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 956.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 955.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 955.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 954.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 952.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 950.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 950.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 950.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 945.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 945.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 944.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 942.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 938.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 934.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 932.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 925.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 921.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 918.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 914.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 913.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 913.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 912.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 904.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 900.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 897.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 895.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 886.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 885.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 885.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 882.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 880.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 880.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 878.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 874.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 870.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 870.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 869.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 869.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 867.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 864.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 863.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 862.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 861.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 858.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 857.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 856.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 849.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 848.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 845.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 841.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 837.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 837.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 836.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 836.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 835.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 833.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 831.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 830.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 824.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 822.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 821.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 820.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 819.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 817.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 816.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 808.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 807.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 806.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 802.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 800.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 800.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 799.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 791.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 788.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 788.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 787.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 786.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 786.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 779.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 778.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 777.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 774.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 774.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 773.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 770.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 770.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 769.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 764.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 761.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 759.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 756.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 753.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 753.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 752.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 751.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 750.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 748.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 746.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 745.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 738.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 738.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 737.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 734.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 731.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 730.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 728.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 727.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 726.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 723.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 720.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 720.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 720.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 719.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 714.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 713.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 712.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 712.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 711.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 709.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 709.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 705.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 700.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 699.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 695.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 694.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 693.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 691.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 690.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 688.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 688.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 688.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 687.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 681.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 676.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 675.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 675.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 673.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 670.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 670.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 668.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 667.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 667.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 666.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 666.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 664.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 664.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 663.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 661.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 657.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 656.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 655.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 653.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 652.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 652.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 651.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 649.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 645.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 640.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 640.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 638.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 637.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 636.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 632.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 630.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 627.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 621.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 620.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 620.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 613.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 613.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 613.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 610.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 609.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 603.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 598.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 598.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 596.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 594.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 594.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 591.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 591.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 582.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 581.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 580.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 580.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 571.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 570.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 568.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 566.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 554.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 552.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 547.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 518.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 487.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

31.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.3
FF:10164-103B2 76 years, female 31.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

309.9
Pig sample Sample description nTPM
Caudate
nTPM: 309.9
Samples: 4

Max nTPM: 343.0
Min nTPM: 270.2
Sample A Female 343.0
Sample B Female 316.6
Sample C Male 309.7
Sample D Male 270.2

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