HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:24.5 nTPM
HPA Brain:155.5 nTPM
GTEx:24.5 nTPM
FANTOM5:234.2 Scaled Tags Per Million
Pig:120.1 nTPM
Mouse:53.4 nTPM
Allen mouse:4.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA001216Antibody CAB004268
Glial cells Not detectedMedium
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 155.5
Sample id Sample description nTPM
Hippocampus
nTPM: 106.1
2529 Female, age 94, left hemisphere 125.2
2621 Female, age 67, right hemisphere 110.9
1911 Female, age 85, right hemisphere 108.5
1855 Male, age 76, left hemisphere 99.5
1898 Male, age 80, left hemisphere 96.8
2148 Female, age 91, left hemisphere 95.7
Dentate gyrus
nTPM: 97.5
2531 Female, age 67, both hemispheres 105.8
2528 Male, age 74, both hemispheres 101.9
2246 Female, age 85, both hemispheres 98.7
2530 Female, age 94, left hemisphere 98.1
2010 Male, age 76, both hemispheres 92.4
1927 Female, age 91, both hemispheres 87.9
Entorhinal gyrus
nTPM: 131.1
1938 Female, age 85, left hemisphere 141.2
2686 Male, age 75, right hemisphere 135.8
2764 Male, age 80, right hemisphere 133.7
2117 Female, age 91, right hemisphere 127.1
2613 Female, age 94, left hemisphere 124.6
1787 Male, age 76, left hemisphere 123.9
Hippocampus, CA1
nTPM: 101.6
2527 Male, age 74, both hemispheres 115.3
2045 Male, age 76, both hemispheres 105.7
2749 Male, age 80, left hemisphere 99.4
1873 Female, age 85, both hemispheres 98.1
2082 Female, age 91, right hemisphere 89.7
Hippocampus, CA2
nTPM: 102.8
1940 Female, age 85, left hemisphere 117.8
2437 Female, age 94, left hemisphere 117.0
1892 Male, age 76, both hemispheres 101.0
2249 Male, age 74, both hemispheres 97.6
2113 Female, age 91, right hemisphere 94.2
1963 Male, age 80, left hemisphere 89.2
Hippocampus, CA3
nTPM: 95.5
1891 Female, age 85, both hemispheres 116.6
2137 Male, age 80, left hemisphere 108.3
1867 Male, age 76, both hemispheres 97.6
2436 Male, age 74, both hemispheres 92.9
2861 Female, age 67, both hemispheres 90.5
2620 Female, age 94, left hemisphere 67.0
Parahippocampal cortex
nTPM: 132.3
1850 Male, age 80, both hemispheres 180.5
2532 Female, age 72, left hemisphere 142.6
2693 Female, age 94, both hemispheres 142.6
1933 Female, age 85, both hemispheres 140.7
2018 Male, age 76, both hemispheres 130.0
2692 Male, age 74, both hemispheres 127.0
2245 Female, age 91, both hemispheres 117.1
2622 Female, age 67, right hemisphere 115.6
1990 Female, age 91, right hemisphere 115.5
2250 Female, age 67, right hemisphere 111.9
Perirhinal gyrus
nTPM: 155.5
1794 Male, age 80, right hemisphere 179.2
1841 Female, age 85, right hemisphere 176.7
2848 Male, age 76, right hemisphere 163.6
1847 Female, age 91, left hemisphere 131.5
2521 Female, age 94, right hemisphere 126.3
Subiculum
nTPM: 122.6
2438 Female, age 94, left hemisphere 164.3
1977 Female, age 85, both hemispheres 123.4
2042 Male, age 76, both hemispheres 119.6
2619 Male, age 74, both hemispheres 111.8
2729 Female, age 91, right hemisphere 111.1
1901 Male, age 80, both hemispheres 105.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 24.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 24.5
Samples: 255

Max nTPM: 58.8
Min nTPM: 9.2
Std nTPM: 7.0
Median nTPM: 23.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 58.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 55.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 50.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 48.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 43.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 42.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 40.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 40.3
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 39.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 39.0
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 38.2
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 234.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 234.2
FF:10153-102I9 76 years, female 261.8
FF:10169-103B7 60 years, female 206.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 120.1
Pig sample Sample description nTPM
Subiculum
nTPM: 97.5
Samples: 4

Max nTPM: 125.8
Min nTPM: 79.0
Sample A Female 125.8
Sample B Female 94.0
Sample C Male 79.0
Sample D Male 91.2
Dorsal hippocampus
nTPM: 86.5
Samples: 4

Max nTPM: 101.5
Min nTPM: 59.0
Sample A Female 101.5
Sample B Female 90.0
Sample C Male 95.3
Sample D Male 59.0
Entorhinal cortex
nTPM: 120.1
Samples: 4

Max nTPM: 133.8
Min nTPM: 113.6
Sample A Female 133.8
Sample B Female 118.0
Sample C Male 115.0
Sample D Male 113.6
Ventral hippocampus
nTPM: 81.5
Samples: 4

Max nTPM: 110.3
Min nTPM: 67.8
Sample A Female 67.8
Sample B Female 72.5
Sample C Male 75.2
Sample D Male 110.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 53.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 53.5
Samples: 4

Max nTPM: 56.7
Min nTPM: 46.5
Sample A Male 54.7
Sample B Male 56.0
Sample C Female 46.5
Sample D Female 56.7
Hippocampal formation
nTPM: 30.6
Samples: 4

Max nTPM: 32.5
Min nTPM: 27.6
Sample A Male 31.6
Sample B Male 27.6
Sample C Female 30.5
Sample D Female 32.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 4.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.6
68546560 Antisense, RP_050120_02_F12, Mouse strain C57BL/6J (56 days, male) 11.8
70812859 Antisense, RP_050712_02_G05, Mouse strain C57BL/6J (56 days, male) 1.2
74359574 Antisense, RP_051219_04_H06, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo