MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:316.9 nTPM
HPA Brain:155.6 nTPM
GTEx:316.9 nTPM
FANTOM5:350.1 Scaled Tags Per Million
Mouse:332.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 155.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 137.8
1870 Female, age 42, unknown 164.8
1830 Male, age 51, unknown 150.3
2411 Female, age 72, unknown 147.1
1833 Male, age 53, unknown 145.8
2019 Male, age 18, unknown 143.0
2828 Female, age 72, unknown 135.6
1827 Male, age 72, unknown 132.6
2666 Male, age 74, left hemisphere 124.8
2219 Male, age 76, both hemispheres 117.5
2586 Male, age 75, left hemisphere 116.1
Dorsal raphe nucleus
nTPM: 147.6
2298 Female, age 72, unknown 156.3
2750 Male, age 76, both hemispheres 151.5
1828 Male, age 53, unknown 146.3
2016 Female, age 72, unknown 144.5
2047 Male, age 72, unknown 139.1
Inferior colliculus
nTPM: 139.1
2849 Male, age 72, unknown 142.2
1848 Female, age 42, unknown 142.0
2097 Female, age 72, unknown 136.9
1890 Male, age 53, unknown 135.5
Median raphe nucleus
nTPM: 151.5
2220 Male, age 76, midline 151.5
Periaquaductal grey, anterior
nTPM: 138.0
2502 Female, age 75, unknown 154.3
1947 Male, age 18, unknown 140.6
1795 Male, age 51, unknown 119.1
Periaquaductal grey, dorsal
nTPM: 135.7
2850 Male, age 76, both hemispheres 155.1
1840 Male, age 53, unknown 142.1
1831 Male, age 72, unknown 127.3
2464 Female, age 72, unknown 118.1
Periaquaductal grey, lateral
nTPM: 134.8
2272 Male, age 74, both hemispheres 139.5
2053 Male, age 18, unknown 133.3
2140 Male, age 76, both hemispheres 131.7
Pretectal area
nTPM: 141.1
1817 Female, age 42, unknown 153.8
2273 Male, age 74, both hemispheres 148.7
1815 Male, age 53, unknown 148.1
2224 Female, age 72, unknown 147.5
1944 Female, age 72, unknown 140.3
2316 Male, age 76, right hemisphere 140.2
2407 Male, age 75, both hemispheres 140.1
2007 Male, age 72, unknown 137.8
2667 Female, age 75, unknown 137.4
2825 Male, age 18, unknown 131.7
1816 Male, age 51, unknown 126.8
Red nucleus
nTPM: 149.6
1821 Female, age 72, unknown 173.0
1865 Male, age 51, unknown 170.1
1954 Female, age 42, unknown 158.7
2503 Female, age 72, unknown 155.9
1904 Male, age 53, unknown 153.0
2785 Male, age 18, unknown 147.1
2769 Male, age 72, unknown 146.0
2823 Male, age 76, right hemisphere 144.3
2227 Male, age 72, unknown 143.9
2725 Female, age 75, unknown 142.5
2584 Male, age 75, left hemisphere 138.0
2588 Male, age 74, left hemisphere 123.0
Substantia nigra
nTPM: 155.6
2241 Male, age 72, unknown 182.1
2699 Male, age 18, unknown 170.8
1851 Male, age 51, unknown 166.1
2665 Male, age 74, both hemispheres 165.7
1916 Female, age 42, unknown 158.2
1889 Female, age 72, unknown 157.9
2409 Female, age 72, unknown 152.0
1941 Male, age 53, unknown 146.4
2590 Female, age 75, unknown 145.8
2583 Male, age 75, right hemisphere 111.3
Superior colliculus
nTPM: 139.6
2587 Male, age 74, left hemisphere 172.5
1913 Female, age 42, unknown 150.4
1995 Male, age 72, unknown 144.5
1839 Male, age 51, unknown 142.2
2668 Female, age 75, unknown 140.4
1895 Male, age 76, right hemisphere 140.1
1796 Male, age 53, unknown 130.6
2261 Male, age 18, unknown 128.9
2087 Female, age 72, unknown 124.5
2664 Male, age 75, both hemispheres 121.8
Ventral tegmental area
nTPM: 150.5
1915 Female, age 42, unknown 157.3
2410 Female, age 72, unknown 156.5
2223 Female, age 72, unknown 154.7
2218 Male, age 76, both hemispheres 150.7
2021 Male, age 53, unknown 144.4
1942 Male, age 51, unknown 139.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 316.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 316.9
Samples: 183

Max nTPM: 528.2
Min nTPM: 190.9
Std nTPM: 67.1
Median nTPM: 299.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 528.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 523.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 521.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 503.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 479.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 471.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 467.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 458.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 451.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 443.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 437.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 350.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 350.1
FF:10158-103A5 76 years, female 350.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 332.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 332.6
Samples: 4

Max nTPM: 350.0
Min nTPM: 321.2
Sample A Male 350.0
Sample B Male 331.2
Sample C Female 321.2
Sample D Female 327.8

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