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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:107.2 nTPM
HPA Brain:33.9 nTPM
GTEx:107.2 nTPM
FANTOM5:61.4 Scaled Tags Per Million
Pig:202.2 nTPM
Mouse:76.6 nTPM
Allen mouse:3.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.9
Sample id Sample description nTPM
Amygdala
nTPM: 33.9
2514 Male, age 75, right hemisphere 41.2
2695 Female, age 67, right hemisphere 38.9
2517 Female, age 94, left hemisphere 37.6
1987 Female, age 91, left hemisphere 26.5
2814 Male, age 76, right hemisphere 25.2
Basal amygdala
nTPM: 33.6
2609 Male, age 75, right hemisphere 49.4
2110 Male, age 80, left hemisphere 44.7
1955 Male, age 76, both hemispheres 32.6
2243 Female, age 91, right hemisphere 29.0
2685 Female, age 94, left hemisphere 28.4
2827 Female, age 67, right hemisphere 17.2
Central amygdala
nTPM: 33.6
2826 Female, age 94, left hemisphere 43.3
2239 Male, age 80, left hemisphere 37.7
2515 Male, age 75, right hemisphere 37.4
1905 Male, age 76, both hemispheres 29.0
2701 Female, age 91, right hemisphere 20.6
Corticomedial amygdala
nTPM: 29.9
2829 Male, age 80, left hemisphere 40.7
2428 Male, age 75, right hemisphere 37.6
2429 Female, age 94, left hemisphere 32.3
2240 Male, age 76, both hemispheres 26.8
2242 Female, age 91, right hemisphere 25.0
2535 Female, age 67, right hemisphere 17.3
Lateral amygdala
nTPM: 33.4
2516 Male, age 75, right hemisphere 46.5
2256 Male, age 80, left hemisphere 43.7
2534 Female, age 94, left hemisphere 38.5
2255 Female, age 91, right hemisphere 28.0
1883 Male, age 76, both hemispheres 24.3
2830 Female, age 67, right hemisphere 19.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 107.2
Samples: 181

Max nTPM: 343.5
Min nTPM: 20.8
Std nTPM: 56.7
Median nTPM: 96.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 343.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 331.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 268.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 248.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 247.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 244.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 238.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 236.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 221.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 208.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 192.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 191.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 189.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 189.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 188.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 187.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 186.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 186.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 185.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 185.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 181.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 181.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 180.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 180.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 177.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 173.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 172.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 168.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 160.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 159.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 158.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 156.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 153.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 150.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 147.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 144.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 141.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 141.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 140.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 138.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 138.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 135.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 134.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 134.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 134.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 133.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 133.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 130.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 129.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 129.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 128.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 127.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 127.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 125.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 125.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 125.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 121.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 119.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 118.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 117.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 116.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 116.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 116.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 115.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 115.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 114.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 114.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 114.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 113.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 112.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 111.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 110.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 110.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 109.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 108.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 108.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 107.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 107.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 107.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 107.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 105.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 105.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 104.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 104.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 103.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 101.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 101.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 98.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 98.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 97.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 96.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 96.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 96.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 94.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 93.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 91.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 91.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 91.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 91.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 90.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 90.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 87.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 86.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 85.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 84.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 83.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 83.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 82.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 82.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 82.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 82.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 82.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 80.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 79.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 79.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 79.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 78.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 78.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 78.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 78.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 78.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 77.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 77.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 76.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 75.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 75.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 74.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 73.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 72.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 72.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 72.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 69.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 69.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 69.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 68.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 66.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 64.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 62.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 62.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 62.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 61.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 61.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 61.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 61.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 61.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 60.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 60.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 60.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 59.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 59.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 59.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 58.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 56.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 55.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 54.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 51.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 51.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 51.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 51.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 50.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 50.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 50.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 46.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 45.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 42.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 41.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 40.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 40.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 39.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 38.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 37.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 37.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 35.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 31.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 30.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 29.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 27.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 26.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 25.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 22.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 20.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

61.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 61.4
FF:10151-102I7 76 years, female 61.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

202.2
Pig sample Sample description nTPM
Amygdala
nTPM: 202.2
Samples: 4

Max nTPM: 236.8
Min nTPM: 155.1
Sample A Female 206.8
Sample B Female 210.1
Sample C Male 236.8
Sample D Male 155.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 76.6
Samples: 4

Max nTPM: 92.6
Min nTPM: 62.5
Sample A Male 62.5
Sample B Male 70.2
Sample C Female 92.6
Sample D Female 81.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.9
74272041 Antisense, RP_050913_01_C02, Mouse strain C57BL/6J (56 days, male) 3.9
71487079 Antisense, RP_050913_01_C02, Mouse strain C57BL/6J (56 days, male) 3.6

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