MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:145.5 nTPM
HPA Brain:92.8 nTPM
GTEx:145.5 nTPM
FANTOM5:64.6 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 92.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.8
2586 Male, age 75, left hemisphere 97.8
2828 Female, age 72, unknown 89.8
1827 Male, age 72, unknown 87.4
1833 Male, age 53, unknown 81.8
2411 Female, age 72, unknown 81.5
2666 Male, age 74, left hemisphere 81.5
1870 Female, age 42, unknown 76.4
1830 Male, age 51, unknown 72.4
2019 Male, age 18, unknown 72.3
2219 Male, age 76, both hemispheres 67.0
Dorsal raphe nucleus
nTPM: 86.5
2047 Male, age 72, unknown 97.2
2298 Female, age 72, unknown 95.2
1828 Male, age 53, unknown 85.8
2016 Female, age 72, unknown 79.0
2750 Male, age 76, both hemispheres 75.0
Inferior colliculus
nTPM: 92.8
1890 Male, age 53, unknown 99.5
2097 Female, age 72, unknown 98.3
1848 Female, age 42, unknown 88.6
2849 Male, age 72, unknown 84.9
Median raphe nucleus
nTPM: 78.2
2220 Male, age 76, midline 78.2
Periaquaductal grey, anterior
nTPM: 90.8
1947 Male, age 18, unknown 94.2
1795 Male, age 51, unknown 92.5
2502 Female, age 75, unknown 85.7
Periaquaductal grey, dorsal
nTPM: 86.7
2850 Male, age 76, both hemispheres 92.8
1840 Male, age 53, unknown 87.3
1831 Male, age 72, unknown 86.3
2464 Female, age 72, unknown 80.2
Periaquaductal grey, lateral
nTPM: 91.5
2272 Male, age 74, both hemispheres 99.9
2053 Male, age 18, unknown 92.7
2140 Male, age 76, both hemispheres 82.0
Pretectal area
nTPM: 89.2
1816 Male, age 51, unknown 106.0
1944 Female, age 72, unknown 103.2
1817 Female, age 42, unknown 98.5
2007 Male, age 72, unknown 93.9
2667 Female, age 75, unknown 89.1
1815 Male, age 53, unknown 88.6
2273 Male, age 74, both hemispheres 84.5
2224 Female, age 72, unknown 83.4
2316 Male, age 76, right hemisphere 79.5
2825 Male, age 18, unknown 78.6
2407 Male, age 75, both hemispheres 76.2
Red nucleus
nTPM: 81.9
1821 Female, age 72, unknown 90.7
2503 Female, age 72, unknown 88.6
2785 Male, age 18, unknown 84.5
1865 Male, age 51, unknown 83.4
2769 Male, age 72, unknown 81.6
2823 Male, age 76, right hemisphere 81.3
2588 Male, age 74, left hemisphere 80.1
2227 Male, age 72, unknown 79.7
2725 Female, age 75, unknown 79.7
2584 Male, age 75, left hemisphere 79.1
1904 Male, age 53, unknown 79.0
1954 Female, age 42, unknown 74.9
Substantia nigra
nTPM: 88.1
1916 Female, age 42, unknown 108.1
1889 Female, age 72, unknown 98.9
2699 Male, age 18, unknown 96.6
2665 Male, age 74, both hemispheres 95.4
1851 Male, age 51, unknown 94.3
2590 Female, age 75, unknown 88.9
2583 Male, age 75, right hemisphere 84.6
1941 Male, age 53, unknown 79.0
2241 Male, age 72, unknown 69.0
2409 Female, age 72, unknown 66.2
Superior colliculus
nTPM: 86.3
1995 Male, age 72, unknown 93.9
2587 Male, age 74, left hemisphere 91.2
2668 Female, age 75, unknown 91.2
2261 Male, age 18, unknown 89.4
1796 Male, age 53, unknown 87.9
2087 Female, age 72, unknown 87.7
1913 Female, age 42, unknown 84.1
2664 Male, age 75, both hemispheres 84.1
1839 Male, age 51, unknown 77.7
1895 Male, age 76, right hemisphere 75.3
Ventral tegmental area
nTPM: 86.4
1915 Female, age 42, unknown 93.8
2410 Female, age 72, unknown 90.2
2218 Male, age 76, both hemispheres 89.2
2021 Male, age 53, unknown 87.6
2223 Female, age 72, unknown 78.9
1942 Male, age 51, unknown 78.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 145.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 145.5
Samples: 183

Max nTPM: 266.5
Min nTPM: 71.3
Std nTPM: 34.2
Median nTPM: 143.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 266.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 260.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 240.3
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 231.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 221.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 218.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 218.7
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 214.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 204.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 199.7
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 198.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 64.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.6
FF:10158-103A5 76 years, female 64.6

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