We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PNRC1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • PNRC1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:54.9 nTPM
HPA Brain:174.7 nTPM
GTEx:54.9 nTPM
FANTOM5:741.3 Scaled Tags Per Million
Pig:98.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

174.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 169.8
1981 Female, age 72, midline 210.1
2048 Male, age 55, midline 194.6
2194 Female, age 79, both hemispheres 161.8
2816 Male, age 47, midline 141.9
2565 Male, age 75, midline 140.6
Cervical spinal cord, dorsal horn
nTPM: 171.8
2173 Female, age 72, unknown 216.3
2069 Male, age 47, both hemispheres 197.9
2296 Male, age 66, both hemispheres 176.3
2721 Male, age 90, both hemispheres 165.3
1877 Male, age 55, unknown 163.4
2297 Male, age 75, both hemispheres 111.8
Cervical spinal cord, ventral horn
nTPM: 174.7
2098 Female, age 72, unknown 240.8
2809 Male, age 90, both hemispheres 197.9
2480 Male, age 75, both hemispheres 168.8
2295 Male, age 66, both hemispheres 166.5
2068 Male, age 55, unknown 159.3
2820 Female, age 79, both hemispheres 114.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 54.9
Samples: 204

Max nTPM: 192.3
Min nTPM: 19.5
Std nTPM: 21.4
Median nTPM: 49.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 192.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 133.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 132.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 126.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 108.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 106.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 106.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 99.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 96.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 95.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 94.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 93.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 92.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 91.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 88.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 86.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 85.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 82.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 81.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 81.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 81.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 81.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 80.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 79.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 78.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 78.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 75.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 73.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 72.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 71.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 70.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 69.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 69.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 68.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 68.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 68.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 68.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 66.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 65.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 65.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 65.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 65.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 64.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 64.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 64.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 63.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 62.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 62.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 62.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 62.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 61.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 61.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 61.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 60.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 60.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 60.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 59.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 59.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 59.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 58.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 58.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 57.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 57.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 57.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 57.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 57.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 57.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 57.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 56.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 56.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 56.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 55.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 55.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 55.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 55.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 55.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 54.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 54.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 54.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 54.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 54.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 54.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 54.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 53.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 53.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 53.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 53.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 53.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 53.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 52.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 52.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 51.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 51.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 50.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 50.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 50.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 50.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 49.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 49.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 49.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 49.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 49.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 49.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 49.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 48.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 48.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 48.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 48.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 48.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 48.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 48.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 47.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 47.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 47.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 47.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 46.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 46.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 46.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 46.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 46.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 46.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 46.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 46.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 46.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 45.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 45.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 45.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 45.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 45.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 45.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 45.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 45.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 45.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 45.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 44.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 44.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 44.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 44.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 43.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 43.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 43.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 43.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 43.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 43.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 43.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 43.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 42.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 42.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 42.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 42.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 42.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 42.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 42.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 42.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 41.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 41.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 41.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 41.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 41.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 40.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 40.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 40.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 40.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 40.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 39.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 39.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 39.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 39.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 38.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 38.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 38.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 38.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 38.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 38.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 38.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 37.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 37.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 37.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 37.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 37.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 36.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 36.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 35.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 35.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 35.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 35.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 34.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 34.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 34.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 34.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 33.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 33.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 33.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 33.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 32.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 32.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 31.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 30.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 30.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 26.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 25.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 25.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 23.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 19.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

741.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 741.3
FF:10159-103A6 76 years, female 804.5
FF:10181-103D1 60 years, female 678.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 98.4
Samples: 4

Max nTPM: 118.9
Min nTPM: 76.0
Sample A Female 76.0
Sample B Female 109.2
Sample C Male 118.9
Sample D Male 89.6
Ventral spinal cord
nTPM: 90.3
Samples: 4

Max nTPM: 103.3
Min nTPM: 76.0
Sample A Female 76.0
Sample B Female 85.0
Sample C Male 96.9
Sample D Male 103.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo