HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.4 nTPM
HPA Brain:23.0 nTPM
GTEx:54.4 nTPM
FANTOM5:19.0 Scaled Tags Per Million
Pig:39.2 nTPM
Mouse:2.6 nTPM
Allen mouse:1.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 23.0
Sample id Sample description nTPM
Hippocampus
nTPM: 22.4
1898 Male, age 80, left hemisphere 25.9
2529 Female, age 94, left hemisphere 24.7
1855 Male, age 76, left hemisphere 22.2
1911 Female, age 85, right hemisphere 21.9
2148 Female, age 91, left hemisphere 21.6
2621 Female, age 67, right hemisphere 18.3
Dentate gyrus
nTPM: 20.7
2010 Male, age 76, both hemispheres 25.4
2528 Male, age 74, both hemispheres 24.1
2530 Female, age 94, left hemisphere 21.0
2246 Female, age 85, both hemispheres 18.9
1927 Female, age 91, both hemispheres 18.0
2531 Female, age 67, both hemispheres 17.0
Entorhinal gyrus
nTPM: 17.7
2117 Female, age 91, right hemisphere 25.9
2686 Male, age 75, right hemisphere 18.8
1938 Female, age 85, left hemisphere 17.7
1787 Male, age 76, left hemisphere 16.5
2764 Male, age 80, right hemisphere 15.5
2613 Female, age 94, left hemisphere 11.8
Hippocampus, CA1
nTPM: 20.9
2082 Female, age 91, right hemisphere 24.3
1873 Female, age 85, both hemispheres 23.0
2527 Male, age 74, both hemispheres 21.3
2045 Male, age 76, both hemispheres 21.1
2749 Male, age 80, left hemisphere 14.9
Hippocampus, CA2
nTPM: 23.0
2249 Male, age 74, both hemispheres 33.3
1940 Female, age 85, left hemisphere 25.6
2113 Female, age 91, right hemisphere 21.8
1963 Male, age 80, left hemisphere 20.0
1892 Male, age 76, both hemispheres 18.7
2437 Female, age 94, left hemisphere 18.6
Hippocampus, CA3
nTPM: 21.4
2436 Male, age 74, both hemispheres 34.3
1867 Male, age 76, both hemispheres 21.8
1891 Female, age 85, both hemispheres 21.2
2137 Male, age 80, left hemisphere 17.8
2620 Female, age 94, left hemisphere 16.8
2861 Female, age 67, both hemispheres 16.5
Parahippocampal cortex
nTPM: 16.9
2018 Male, age 76, both hemispheres 24.2
2250 Female, age 67, right hemisphere 19.5
1933 Female, age 85, both hemispheres 19.2
1850 Male, age 80, both hemispheres 17.8
1990 Female, age 91, right hemisphere 17.4
2245 Female, age 91, both hemispheres 16.6
2693 Female, age 94, both hemispheres 15.0
2532 Female, age 72, left hemisphere 13.4
2622 Female, age 67, right hemisphere 13.4
2692 Male, age 74, both hemispheres 12.9
Perirhinal gyrus
nTPM: 16.1
1847 Female, age 91, left hemisphere 17.8
2521 Female, age 94, right hemisphere 17.5
1841 Female, age 85, right hemisphere 15.6
2848 Male, age 76, right hemisphere 15.0
1794 Male, age 80, right hemisphere 14.5
Subiculum
nTPM: 20.6
2042 Male, age 76, both hemispheres 25.1
2729 Female, age 91, right hemisphere 24.4
2619 Male, age 74, both hemispheres 20.0
1901 Male, age 80, both hemispheres 19.5
1977 Female, age 85, both hemispheres 19.2
2438 Female, age 94, left hemisphere 15.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 54.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 54.4
Samples: 255

Max nTPM: 116.6
Min nTPM: 24.2
Std nTPM: 15.7
Median nTPM: 51.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 116.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 108.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 106.5
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 99.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 95.3
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 94.8
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 93.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 88.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 87.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 86.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 84.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 19.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 19.0
FF:10153-102I9 76 years, female 19.3
FF:10169-103B7 60 years, female 18.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 39.2
Pig sample Sample description nTPM
Subiculum
nTPM: 37.6
Samples: 4

Max nTPM: 45.7
Min nTPM: 33.8
Sample A Female 45.7
Sample B Female 36.5
Sample C Male 33.8
Sample D Male 34.2
Dorsal hippocampus
nTPM: 39.2
Samples: 4

Max nTPM: 50.5
Min nTPM: 29.1
Sample A Female 50.5
Sample B Female 30.2
Sample C Male 46.9
Sample D Male 29.1
Entorhinal cortex
nTPM: 30.3
Samples: 4

Max nTPM: 40.8
Min nTPM: 22.1
Sample A Female 27.8
Sample B Female 30.4
Sample C Male 40.8
Sample D Male 22.1
Ventral hippocampus
nTPM: 38.3
Samples: 4

Max nTPM: 48.3
Min nTPM: 30.4
Sample A Female 37.5
Sample B Female 30.4
Sample C Male 48.3
Sample D Male 37.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 2.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 2.6
Samples: 4

Max nTPM: 3.3
Min nTPM: 1.8
Sample A Male 2.2
Sample B Male 1.8
Sample C Female 3.2
Sample D Female 3.3
Hippocampal formation
nTPM: 2.1
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.7
Sample A Male 2.5
Sample B Male 1.8
Sample C Female 1.7
Sample D Female 2.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
71489780 Antisense, RP_050512_04_B06, Mouse strain C57BL/6J (56 days, male) 1.6
Hippocampal formation
Expression energy: 1.6
71489780 Antisense, RP_050512_04_B06, Mouse strain C57BL/6J (56 days, male) 1.6

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