MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.6 nTPM
HPA Brain:44.2 nTPM
GTEx:36.6 nTPM
FANTOM5:99.4 Scaled Tags Per Million
Pig:64.4 nTPM
Mouse:53.0 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 44.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.0
1870 Female, age 42, unknown 41.2
2411 Female, age 72, unknown 35.9
1827 Male, age 72, unknown 35.3
2019 Male, age 18, unknown 35.1
1830 Male, age 51, unknown 34.9
1833 Male, age 53, unknown 34.6
2586 Male, age 75, left hemisphere 32.9
2828 Female, age 72, unknown 32.7
2666 Male, age 74, left hemisphere 29.5
2219 Male, age 76, both hemispheres 27.6
Dorsal raphe nucleus
nTPM: 36.2
1828 Male, age 53, unknown 36.4
2750 Male, age 76, both hemispheres 36.4
2298 Female, age 72, unknown 36.2
2016 Female, age 72, unknown 36.0
2047 Male, age 72, unknown 36.0
Inferior colliculus
nTPM: 37.1
2097 Female, age 72, unknown 38.3
2849 Male, age 72, unknown 37.5
1848 Female, age 42, unknown 36.4
1890 Male, age 53, unknown 36.2
Median raphe nucleus
nTPM: 43.7
2220 Male, age 76, midline 43.7
Periaquaductal grey, anterior
nTPM: 39.7
1947 Male, age 18, unknown 42.3
2502 Female, age 75, unknown 40.7
1795 Male, age 51, unknown 36.0
Periaquaductal grey, dorsal
nTPM: 40.4
2850 Male, age 76, both hemispheres 55.1
1840 Male, age 53, unknown 37.7
1831 Male, age 72, unknown 34.7
2464 Female, age 72, unknown 34.0
Periaquaductal grey, lateral
nTPM: 44.2
2140 Male, age 76, both hemispheres 58.7
2272 Male, age 74, both hemispheres 39.8
2053 Male, age 18, unknown 34.1
Pretectal area
nTPM: 37.9
2273 Male, age 74, both hemispheres 41.2
2224 Female, age 72, unknown 41.0
2316 Male, age 76, right hemisphere 39.8
1817 Female, age 42, unknown 39.6
2825 Male, age 18, unknown 38.6
1815 Male, age 53, unknown 38.2
1816 Male, age 51, unknown 37.4
2007 Male, age 72, unknown 37.2
2667 Female, age 75, unknown 36.6
1944 Female, age 72, unknown 35.6
2407 Male, age 75, both hemispheres 31.6
Red nucleus
nTPM: 36.5
2725 Female, age 75, unknown 42.2
1865 Male, age 51, unknown 40.9
1904 Male, age 53, unknown 39.7
1954 Female, age 42, unknown 39.0
1821 Female, age 72, unknown 38.3
2227 Male, age 72, unknown 36.8
2785 Male, age 18, unknown 36.6
2503 Female, age 72, unknown 36.4
2769 Male, age 72, unknown 34.7
2823 Male, age 76, right hemisphere 33.0
2588 Male, age 74, left hemisphere 32.1
2584 Male, age 75, left hemisphere 28.4
Substantia nigra
nTPM: 38.3
2241 Male, age 72, unknown 45.6
1916 Female, age 42, unknown 43.8
2699 Male, age 18, unknown 41.4
1851 Male, age 51, unknown 41.1
2409 Female, age 72, unknown 39.8
1889 Female, age 72, unknown 37.9
1941 Male, age 53, unknown 36.9
2590 Female, age 75, unknown 33.3
2665 Male, age 74, both hemispheres 31.8
2583 Male, age 75, right hemisphere 31.5
Superior colliculus
nTPM: 35.6
2587 Male, age 74, left hemisphere 38.1
1895 Male, age 76, right hemisphere 37.3
1913 Female, age 42, unknown 37.1
1796 Male, age 53, unknown 36.9
2261 Male, age 18, unknown 36.2
2087 Female, age 72, unknown 35.4
2668 Female, age 75, unknown 35.1
1839 Male, age 51, unknown 34.2
1995 Male, age 72, unknown 33.8
2664 Male, age 75, both hemispheres 32.0
Ventral tegmental area
nTPM: 38.4
2410 Female, age 72, unknown 41.3
1915 Female, age 42, unknown 41.1
2218 Male, age 76, both hemispheres 40.7
2021 Male, age 53, unknown 36.0
2223 Female, age 72, unknown 35.8
1942 Male, age 51, unknown 35.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 36.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.6
Samples: 183

Max nTPM: 77.0
Min nTPM: 23.0
Std nTPM: 9.1
Median nTPM: 34.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 77.0
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 75.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 74.0
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 65.8
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 65.8
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 64.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 64.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 63.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 61.7
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 56.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 53.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 99.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 99.4
FF:10158-103A5 76 years, female 99.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 64.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.1
Samples: 4

Max nTPM: 70.3
Min nTPM: 55.5
Sample A Female 70.3
Sample B Female 59.9
Sample C Male 58.8
Sample D Male 55.5
Midbrain
nTPM: 64.4
Samples: 4

Max nTPM: 83.8
Min nTPM: 57.2
Sample A Female 83.8
Sample B Female 58.1
Sample C Male 58.5
Sample D Male 57.2
Periaqueductal gray
nTPM: 54.6
Samples: 3

Max nTPM: 57.4
Min nTPM: 52.3
Sample B Female 54.1
Sample C Male 57.4
Sample D Male 52.3
Superior colliculi
nTPM: 63.6
Samples: 4

Max nTPM: 70.0
Min nTPM: 59.5
Sample A Female 70.0
Sample B Female 62.7
Sample C Male 62.1
Sample D Male 59.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 53.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.0
Samples: 4

Max nTPM: 54.0
Min nTPM: 51.8
Sample A Male 52.9
Sample B Male 54.0
Sample C Female 53.3
Sample D Female 51.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
70565431 Antisense, RP_050623_04_H10, Mouse strain C57BL/6J (56 days, male) 0.8

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