HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:107.9 nTPM
HPA Brain:68.3 nTPM
GTEx:107.9 nTPM
FANTOM5:59.7 Scaled Tags Per Million
Pig:23.4 nTPM
Mouse:6.2 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA052281
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 68.3
Sample id Sample description nTPM
Hippocampus
nTPM: 59.3
2529 Female, age 94, left hemisphere 70.3
1898 Male, age 80, left hemisphere 69.7
2621 Female, age 67, right hemisphere 58.3
1911 Female, age 85, right hemisphere 54.4
2148 Female, age 91, left hemisphere 54.3
1855 Male, age 76, left hemisphere 48.4
Dentate gyrus
nTPM: 55.0
2531 Female, age 67, both hemispheres 65.5
2530 Female, age 94, left hemisphere 58.8
2010 Male, age 76, both hemispheres 53.8
2246 Female, age 85, both hemispheres 52.9
2528 Male, age 74, both hemispheres 51.5
1927 Female, age 91, both hemispheres 47.2
Entorhinal gyrus
nTPM: 68.3
1938 Female, age 85, left hemisphere 72.1
2686 Male, age 75, right hemisphere 71.8
2764 Male, age 80, right hemisphere 68.9
2613 Female, age 94, left hemisphere 68.4
1787 Male, age 76, left hemisphere 66.5
2117 Female, age 91, right hemisphere 62.0
Hippocampus, CA1
nTPM: 56.1
2749 Male, age 80, left hemisphere 65.2
2082 Female, age 91, right hemisphere 61.4
2527 Male, age 74, both hemispheres 53.2
1873 Female, age 85, both hemispheres 51.2
2045 Male, age 76, both hemispheres 49.4
Hippocampus, CA2
nTPM: 54.5
2437 Female, age 94, left hemisphere 63.4
1963 Male, age 80, left hemisphere 61.5
2113 Female, age 91, right hemisphere 54.3
1940 Female, age 85, left hemisphere 52.7
1892 Male, age 76, both hemispheres 49.2
2249 Male, age 74, both hemispheres 46.1
Hippocampus, CA3
nTPM: 56.9
2861 Female, age 67, both hemispheres 83.0
2137 Male, age 80, left hemisphere 61.1
1867 Male, age 76, both hemispheres 52.8
1891 Female, age 85, both hemispheres 50.1
2436 Male, age 74, both hemispheres 47.7
2620 Female, age 94, left hemisphere 47.0
Parahippocampal cortex
nTPM: 61.2
2622 Female, age 67, right hemisphere 70.4
1933 Female, age 85, both hemispheres 68.7
2245 Female, age 91, both hemispheres 63.6
2692 Male, age 74, both hemispheres 63.5
2532 Female, age 72, left hemisphere 63.3
1990 Female, age 91, right hemisphere 60.8
1850 Male, age 80, both hemispheres 58.2
2250 Female, age 67, right hemisphere 57.9
2018 Male, age 76, both hemispheres 56.6
2693 Female, age 94, both hemispheres 48.8
Perirhinal gyrus
nTPM: 61.8
1794 Male, age 80, right hemisphere 75.0
1847 Female, age 91, left hemisphere 71.1
2521 Female, age 94, right hemisphere 62.6
1841 Female, age 85, right hemisphere 56.3
2848 Male, age 76, right hemisphere 44.1
Subiculum
nTPM: 61.2
2619 Male, age 74, both hemispheres 68.4
1977 Female, age 85, both hemispheres 67.4
1901 Male, age 80, both hemispheres 63.9
2438 Female, age 94, left hemisphere 63.1
2729 Female, age 91, right hemisphere 53.7
2042 Male, age 76, both hemispheres 50.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 107.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 107.9
Samples: 255

Max nTPM: 295.0
Min nTPM: 30.6
Std nTPM: 37.4
Median nTPM: 102.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 295.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 284.2
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 216.0
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 205.0
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 204.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 193.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 190.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 190.6
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 188.9
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 186.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 185.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 59.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 59.7
FF:10153-102I9 76 years, female 63.3
FF:10169-103B7 60 years, female 56.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 23.4
Pig sample Sample description nTPM
Subiculum
nTPM: 18.8
Samples: 4

Max nTPM: 22.4
Min nTPM: 14.7
Sample A Female 22.4
Sample B Female 20.5
Sample C Male 17.7
Sample D Male 14.7
Dorsal hippocampus
nTPM: 21.9
Samples: 4

Max nTPM: 27.6
Min nTPM: 13.8
Sample A Female 27.6
Sample B Female 24.1
Sample C Male 22.0
Sample D Male 13.8
Entorhinal cortex
nTPM: 23.4
Samples: 4

Max nTPM: 30.0
Min nTPM: 18.1
Sample A Female 18.6
Sample B Female 30.0
Sample C Male 27.0
Sample D Male 18.1
Ventral hippocampus
nTPM: 23.2
Samples: 4

Max nTPM: 27.8
Min nTPM: 19.2
Sample A Female 22.8
Sample B Female 19.2
Sample C Male 27.8
Sample D Male 22.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 6.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 6.0
Samples: 4

Max nTPM: 6.6
Min nTPM: 5.5
Sample A Male 5.5
Sample B Male 6.6
Sample C Female 6.4
Sample D Female 5.5
Hippocampal formation
nTPM: 6.2
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.4
Sample A Male 5.9
Sample B Male 5.4
Sample C Female 6.6
Sample D Female 6.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
71656695 Antisense, RP_050927_04_B03, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo