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NDUFB11
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  • NDUFB11
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:187.0 nTPM
HPA Brain:99.9 nTPM
GTEx:187.0 nTPM
FANTOM5:181.7 Scaled Tags Per Million
Pig:29.0 nTPM
Mouse:201.1 nTPM
Allen mouse:4.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.9
Sample id Sample description nTPM
Amygdala
nTPM: 99.9
2814 Male, age 76, right hemisphere 119.4
2514 Male, age 75, right hemisphere 103.0
2695 Female, age 67, right hemisphere 96.2
2517 Female, age 94, left hemisphere 91.0
1987 Female, age 91, left hemisphere 90.0
Basal amygdala
nTPM: 92.3
2609 Male, age 75, right hemisphere 109.1
2685 Female, age 94, left hemisphere 96.8
1955 Male, age 76, both hemispheres 89.9
2110 Male, age 80, left hemisphere 87.1
2243 Female, age 91, right hemisphere 87.1
2827 Female, age 67, right hemisphere 83.9
Central amygdala
nTPM: 98.0
2826 Female, age 94, left hemisphere 125.9
1905 Male, age 76, both hemispheres 108.7
2515 Male, age 75, right hemisphere 94.5
2239 Male, age 80, left hemisphere 83.1
2701 Female, age 91, right hemisphere 77.5
Corticomedial amygdala
nTPM: 92.1
2428 Male, age 75, right hemisphere 105.2
2829 Male, age 80, left hemisphere 94.4
2242 Female, age 91, right hemisphere 92.3
2535 Female, age 67, right hemisphere 90.2
2429 Female, age 94, left hemisphere 89.1
2240 Male, age 76, both hemispheres 81.2
Lateral amygdala
nTPM: 90.6
2534 Female, age 94, left hemisphere 114.9
2516 Male, age 75, right hemisphere 102.0
1883 Male, age 76, both hemispheres 101.3
2255 Female, age 91, right hemisphere 78.4
2830 Female, age 67, right hemisphere 76.9
2256 Male, age 80, left hemisphere 70.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

187.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 187.0
Samples: 181

Max nTPM: 545.2
Min nTPM: 95.3
Std nTPM: 62.6
Median nTPM: 170.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 545.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 529.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 418.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 396.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 346.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 337.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 306.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 296.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 295.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 294.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 276.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 267.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 266.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 261.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 260.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 254.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 253.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 253.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 249.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 248.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 248.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 243.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 243.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 236.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 234.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 231.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 227.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 227.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 226.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 226.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 225.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 224.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 223.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 223.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 222.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 220.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 220.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 219.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 219.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 214.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 213.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 209.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 208.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 208.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 205.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 204.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 204.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 203.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 200.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 199.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 199.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 198.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 198.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 197.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 196.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 196.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 196.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 195.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 194.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 194.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 193.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 193.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 192.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 192.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 192.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 191.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 191.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 190.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 189.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 188.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 188.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 187.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 187.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 185.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 185.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 185.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 184.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 184.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 181.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 181.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 180.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 179.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 177.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 177.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 177.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 175.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 175.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 174.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 174.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 173.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 170.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 170.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 169.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 169.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 169.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 169.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 168.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 168.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 168.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 168.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 168.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 166.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 166.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 165.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 165.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 165.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 164.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 164.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 163.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 163.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 163.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 163.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 162.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 161.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 160.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 159.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 159.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 158.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 158.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 157.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 156.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 156.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 155.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 155.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 155.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 155.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 155.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 154.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 154.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 154.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 153.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 153.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 153.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 152.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 152.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 151.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 150.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 149.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 148.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 148.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 147.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 147.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 146.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 145.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 145.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 145.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 144.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 143.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 143.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 143.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 141.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 139.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 138.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 138.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 136.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 136.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 136.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 136.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 134.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 132.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 132.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 132.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 132.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 131.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 131.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 130.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 129.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 126.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 126.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 122.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 120.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 120.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 119.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 117.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 116.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 115.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 111.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 110.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 105.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 99.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 95.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

181.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 181.7
FF:10151-102I7 76 years, female 181.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.0
Pig sample Sample description nTPM
Amygdala
nTPM: 29.1
Samples: 4

Max nTPM: 39.4
Min nTPM: 23.7
Sample A Female 39.4
Sample B Female 26.6
Sample C Male 26.5
Sample D Male 23.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 201.1
Samples: 4

Max nTPM: 216.3
Min nTPM: 195.4
Sample A Male 195.5
Sample B Male 197.1
Sample C Female 216.3
Sample D Female 195.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.7
67764909 Antisense, RP_040916_02_C04, Mouse strain C57BL/6J (56 days, male) 4.7

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