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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:82.6 nTPM
HPA:21.9 nTPM
GTEx:82.6 nTPM
FANTOM5:97.3 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA030751Antibody HPA030752Antibody HPA030754Antibody CAB034099
Glandular cells LowNot detectedNot detectedLow





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.9
overview
Male, age 65
Small intestine sample 232
nTPM: 28
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 22.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 19.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 18.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 82.6
Samples: 207

Max nTPM: 199.1
Min nTPM: 22.7
Std nTPM: 32.6
Median nTPM: 75.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 199.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 174.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 167.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 155.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 154.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 153.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 152.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 149.4
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 147.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 147.0
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 145.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 145.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 140.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 140.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 139.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 137.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 136.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 135.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 134.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 134.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 134.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 131.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 130.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 129.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 127.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 126.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 125.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 125.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 124.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 123.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 123.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 122.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 120.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 117.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 116.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 115.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 115.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 115.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 114.2
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 114.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 113.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 113.3
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 111.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 107.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 106.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 105.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 104.6
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 104.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 103.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 100.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 100.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 99.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 98.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 97.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 96.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 96.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 95.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 95.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 94.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 93.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 93.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 93.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 92.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 92.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 92.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 92.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 92.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 90.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 90.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 90.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 90.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 89.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 88.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 88.6
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 88.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 88.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 87.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 87.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 87.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 86.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 84.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 83.1
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 83.1
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 82.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 82.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 82.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 82.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 82.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 81.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 80.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 80.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 79.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 79.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 78.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 78.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 78.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 78.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 78.0
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 77.8
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 77.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 76.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 75.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 75.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 75.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 75.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 74.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 74.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 74.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 74.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 74.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 73.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 73.5
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 73.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 73.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 73.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 73.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 72.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 72.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 71.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 70.6
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 70.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 69.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 69.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 69.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 68.9
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 68.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 68.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 67.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 67.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 67.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 66.9
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 66.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 66.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 66.5
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 66.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 66.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 66.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 65.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 65.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 65.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 65.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 64.8
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 64.6
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 64.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 64.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 63.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 63.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 63.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 62.4
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 62.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 62.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 60.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 60.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 59.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 59.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 58.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 58.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 58.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 58.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 57.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 57.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 56.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 56.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 55.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 55.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 55.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 55.0
GTEX-1192X-2526-SM-59868 50-59 years, male 54.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 53.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 53.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 53.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 53.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 53.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 52.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 51.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 51.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 50.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 50.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 50.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 50.1
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 49.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 48.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 48.8
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 48.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 47.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 46.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 44.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 44.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 42.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 42.1
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 41.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 41.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 40.9
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 40.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 39.6
GTEX-178AV-1226-SM-GOR11 40-49 years, male 39.1
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 38.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 38.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 38.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 38.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 35.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 33.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 30.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 30.3
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 30.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 30.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 22.7
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

97.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 97.3
FF:10024-101D6 15,40,85 years, mixed 97.3

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