MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.3 nTPM
HPA Brain:49.5 nTPM
GTEx:46.3 nTPM
FANTOM5:26.9 Scaled Tags Per Million
Pig:126.1 nTPM
Mouse:91.7 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 49.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.1
2411 Female, age 72, unknown 38.9
2219 Male, age 76, both hemispheres 36.0
1827 Male, age 72, unknown 35.6
2828 Female, age 72, unknown 33.7
1870 Female, age 42, unknown 31.7
2666 Male, age 74, left hemisphere 31.0
1833 Male, age 53, unknown 30.7
2019 Male, age 18, unknown 28.4
1830 Male, age 51, unknown 27.9
2586 Male, age 75, left hemisphere 26.8
Dorsal raphe nucleus
nTPM: 40.6
2298 Female, age 72, unknown 51.0
2047 Male, age 72, unknown 41.4
1828 Male, age 53, unknown 39.1
2750 Male, age 76, both hemispheres 35.7
2016 Female, age 72, unknown 35.5
Inferior colliculus
nTPM: 32.8
2097 Female, age 72, unknown 37.0
1890 Male, age 53, unknown 32.4
1848 Female, age 42, unknown 32.3
2849 Male, age 72, unknown 29.5
Median raphe nucleus
nTPM: 39.0
2220 Male, age 76, midline 39.0
Periaquaductal grey, anterior
nTPM: 38.1
1947 Male, age 18, unknown 43.7
1795 Male, age 51, unknown 35.6
2502 Female, age 75, unknown 35.1
Periaquaductal grey, dorsal
nTPM: 35.1
2850 Male, age 76, both hemispheres 42.2
1840 Male, age 53, unknown 37.3
2464 Female, age 72, unknown 30.6
1831 Male, age 72, unknown 30.4
Periaquaductal grey, lateral
nTPM: 39.4
2272 Male, age 74, both hemispheres 46.0
2140 Male, age 76, both hemispheres 37.6
2053 Male, age 18, unknown 34.8
Pretectal area
nTPM: 36.6
2273 Male, age 74, both hemispheres 45.7
2667 Female, age 75, unknown 45.5
2224 Female, age 72, unknown 41.4
1816 Male, age 51, unknown 38.7
2825 Male, age 18, unknown 36.9
1815 Male, age 53, unknown 34.2
2007 Male, age 72, unknown 34.0
1817 Female, age 42, unknown 33.8
1944 Female, age 72, unknown 33.2
2316 Male, age 76, right hemisphere 30.2
2407 Male, age 75, both hemispheres 28.6
Red nucleus
nTPM: 31.9
1821 Female, age 72, unknown 41.2
1954 Female, age 42, unknown 37.2
2725 Female, age 75, unknown 36.6
2769 Male, age 72, unknown 32.8
1904 Male, age 53, unknown 32.6
1865 Male, age 51, unknown 31.9
2227 Male, age 72, unknown 31.4
2503 Female, age 72, unknown 29.4
2588 Male, age 74, left hemisphere 28.4
2823 Male, age 76, right hemisphere 28.4
2584 Male, age 75, left hemisphere 26.4
2785 Male, age 18, unknown 26.3
Substantia nigra
nTPM: 49.5
1916 Female, age 42, unknown 77.0
2241 Male, age 72, unknown 69.3
2699 Male, age 18, unknown 54.7
1851 Male, age 51, unknown 54.4
2409 Female, age 72, unknown 48.1
1941 Male, age 53, unknown 45.3
1889 Female, age 72, unknown 40.1
2590 Female, age 75, unknown 37.4
2583 Male, age 75, right hemisphere 36.2
2665 Male, age 74, both hemispheres 32.7
Superior colliculus
nTPM: 30.8
1796 Male, age 53, unknown 35.2
2261 Male, age 18, unknown 34.4
2087 Female, age 72, unknown 33.8
2587 Male, age 74, left hemisphere 33.3
1839 Male, age 51, unknown 32.5
1895 Male, age 76, right hemisphere 31.6
2664 Male, age 75, both hemispheres 30.9
2668 Female, age 75, unknown 29.0
1995 Male, age 72, unknown 23.8
1913 Female, age 42, unknown 23.7
Ventral tegmental area
nTPM: 42.5
1915 Female, age 42, unknown 52.7
2218 Male, age 76, both hemispheres 48.0
2410 Female, age 72, unknown 45.6
2021 Male, age 53, unknown 39.6
1942 Male, age 51, unknown 38.9
2223 Female, age 72, unknown 30.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 46.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.3
Samples: 183

Max nTPM: 133.0
Min nTPM: 11.5
Std nTPM: 21.4
Median nTPM: 41.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 133.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 129.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 115.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 112.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 97.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 94.7
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 91.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 87.7
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 84.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 82.0
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 81.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.9
FF:10158-103A5 76 years, female 26.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 126.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 112.0
Samples: 4

Max nTPM: 153.6
Min nTPM: 59.3
Sample A Female 153.6
Sample B Female 90.1
Sample C Male 145.0
Sample D Male 59.3
Midbrain
nTPM: 109.5
Samples: 4

Max nTPM: 138.1
Min nTPM: 81.1
Sample A Female 81.1
Sample B Female 91.3
Sample C Male 127.4
Sample D Male 138.1
Periaqueductal gray
nTPM: 88.5
Samples: 3

Max nTPM: 105.8
Min nTPM: 72.8
Sample B Female 87.0
Sample C Male 105.8
Sample D Male 72.8
Superior colliculi
nTPM: 126.1
Samples: 4

Max nTPM: 147.4
Min nTPM: 115.2
Sample A Female 147.4
Sample B Female 118.9
Sample C Male 122.9
Sample D Male 115.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 91.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.7
Samples: 4

Max nTPM: 94.4
Min nTPM: 87.9
Sample A Male 94.4
Sample B Male 93.3
Sample C Female 87.9
Sample D Female 91.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
69817372 Antisense, RP_050510_03_C04, Mouse strain C57BL/6J (56 days, male) 1.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo