MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.7 nTPM
HPA Brain:42.2 nTPM
GTEx:31.7 nTPM
FANTOM5:7.3 Scaled Tags Per Million
Pig:14.3 nTPM
Mouse:63.6 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.1
2586 Male, age 75, left hemisphere 20.8
1870 Female, age 42, unknown 19.4
2828 Female, age 72, unknown 18.9
2411 Female, age 72, unknown 16.2
1833 Male, age 53, unknown 15.4
2219 Male, age 76, both hemispheres 14.9
1827 Male, age 72, unknown 14.8
1830 Male, age 51, unknown 14.0
2666 Male, age 74, left hemisphere 10.5
2019 Male, age 18, unknown 6.3
Dorsal raphe nucleus
nTPM: 36.6
2047 Male, age 72, unknown 81.1
2750 Male, age 76, both hemispheres 28.7
2298 Female, age 72, unknown 27.3
2016 Female, age 72, unknown 27.1
1828 Male, age 53, unknown 18.6
Inferior colliculus
nTPM: 17.6
2849 Male, age 72, unknown 21.8
1848 Female, age 42, unknown 20.6
1890 Male, age 53, unknown 14.2
2097 Female, age 72, unknown 13.8
Median raphe nucleus
nTPM: 42.2
2220 Male, age 76, midline 42.2
Periaquaductal grey, anterior
nTPM: 16.3
2502 Female, age 75, unknown 19.8
1947 Male, age 18, unknown 14.7
1795 Male, age 51, unknown 14.3
Periaquaductal grey, dorsal
nTPM: 24.8
1840 Male, age 53, unknown 33.3
2850 Male, age 76, both hemispheres 31.3
2464 Female, age 72, unknown 21.4
1831 Male, age 72, unknown 13.2
Periaquaductal grey, lateral
nTPM: 21.0
2140 Male, age 76, both hemispheres 27.7
2053 Male, age 18, unknown 20.7
2272 Male, age 74, both hemispheres 14.5
Pretectal area
nTPM: 17.3
2825 Male, age 18, unknown 45.8
2224 Female, age 72, unknown 24.5
2316 Male, age 76, right hemisphere 20.1
2273 Male, age 74, both hemispheres 15.3
1817 Female, age 42, unknown 14.7
2667 Female, age 75, unknown 14.6
1816 Male, age 51, unknown 12.9
1815 Male, age 53, unknown 12.5
2407 Male, age 75, both hemispheres 12.0
1944 Female, age 72, unknown 10.5
2007 Male, age 72, unknown 7.7
Red nucleus
nTPM: 13.3
1954 Female, age 42, unknown 17.6
1821 Female, age 72, unknown 16.0
2588 Male, age 74, left hemisphere 14.7
2503 Female, age 72, unknown 14.6
2769 Male, age 72, unknown 13.8
2725 Female, age 75, unknown 13.7
1865 Male, age 51, unknown 13.4
2227 Male, age 72, unknown 13.4
1904 Male, age 53, unknown 13.3
2823 Male, age 76, right hemisphere 12.4
2584 Male, age 75, left hemisphere 9.3
2785 Male, age 18, unknown 7.5
Substantia nigra
nTPM: 16.6
2699 Male, age 18, unknown 21.4
2665 Male, age 74, both hemispheres 19.1
2590 Female, age 75, unknown 18.8
1941 Male, age 53, unknown 17.7
2409 Female, age 72, unknown 17.0
1916 Female, age 42, unknown 16.9
2241 Male, age 72, unknown 15.0
1851 Male, age 51, unknown 14.7
2583 Male, age 75, right hemisphere 13.4
1889 Female, age 72, unknown 12.3
Superior colliculus
nTPM: 14.6
1839 Male, age 51, unknown 19.2
2587 Male, age 74, left hemisphere 18.2
1796 Male, age 53, unknown 16.3
2664 Male, age 75, both hemispheres 16.0
1895 Male, age 76, right hemisphere 15.8
1995 Male, age 72, unknown 14.9
2261 Male, age 18, unknown 14.6
2087 Female, age 72, unknown 11.0
2668 Female, age 75, unknown 10.1
1913 Female, age 42, unknown 10.0
Ventral tegmental area
nTPM: 17.5
2021 Male, age 53, unknown 23.3
1942 Male, age 51, unknown 19.3
2410 Female, age 72, unknown 17.9
2223 Female, age 72, unknown 16.1
1915 Female, age 42, unknown 15.5
2218 Male, age 76, both hemispheres 12.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.7
Samples: 183

Max nTPM: 137.6
Min nTPM: 2.8
Std nTPM: 22.2
Median nTPM: 25.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 137.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 105.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 101.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 99.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 97.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 92.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 88.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 86.5
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 78.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 76.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 73.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 7.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.3
FF:10158-103A5 76 years, female 7.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 14.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.2
Samples: 4

Max nTPM: 16.6
Min nTPM: 10.5
Sample A Female 16.6
Sample B Female 10.5
Sample C Male 13.6
Sample D Male 15.9
Midbrain
nTPM: 12.4
Samples: 4

Max nTPM: 16.3
Min nTPM: 5.0
Sample A Female 5.0
Sample B Female 16.3
Sample C Male 14.7
Sample D Male 13.6
Periaqueductal gray
nTPM: 14.3
Samples: 3

Max nTPM: 16.4
Min nTPM: 10.6
Sample B Female 16.4
Sample C Male 15.9
Sample D Male 10.6
Superior colliculi
nTPM: 13.9
Samples: 4

Max nTPM: 17.6
Min nTPM: 8.6
Sample A Female 17.6
Sample B Female 8.6
Sample C Male 14.4
Sample D Male 15.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 63.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.7
Samples: 4

Max nTPM: 69.1
Min nTPM: 56.2
Sample A Male 63.5
Sample B Male 65.8
Sample C Female 56.2
Sample D Female 69.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
76003550 Antisense, RP_060608_02_F11, Mouse strain C57BL/6J (56 days, male) 0.1

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