MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:93.4 nTPM
HPA Brain:123.0 nTPM
GTEx:93.4 nTPM
FANTOM5:146.7 Scaled Tags Per Million
Pig:248.9 nTPM
Mouse:168.0 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 123.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.9
1833 Male, age 53, unknown 126.5
1830 Male, age 51, unknown 120.7
1870 Female, age 42, unknown 107.6
2411 Female, age 72, unknown 100.6
2828 Female, age 72, unknown 96.8
2019 Male, age 18, unknown 96.5
2666 Male, age 74, left hemisphere 89.5
1827 Male, age 72, unknown 81.4
2219 Male, age 76, both hemispheres 78.0
2586 Male, age 75, left hemisphere 71.3
Dorsal raphe nucleus
nTPM: 85.9
2750 Male, age 76, both hemispheres 110.1
2016 Female, age 72, unknown 96.5
1828 Male, age 53, unknown 79.1
2047 Male, age 72, unknown 72.3
2298 Female, age 72, unknown 71.5
Inferior colliculus
nTPM: 80.1
2849 Male, age 72, unknown 86.7
1848 Female, age 42, unknown 85.2
1890 Male, age 53, unknown 75.4
2097 Female, age 72, unknown 73.2
Median raphe nucleus
nTPM: 76.4
2220 Male, age 76, midline 76.4
Periaquaductal grey, anterior
nTPM: 80.3
2502 Female, age 75, unknown 94.7
1947 Male, age 18, unknown 86.5
1795 Male, age 51, unknown 59.7
Periaquaductal grey, dorsal
nTPM: 72.9
2850 Male, age 76, both hemispheres 82.6
2464 Female, age 72, unknown 79.7
1831 Male, age 72, unknown 66.2
1840 Male, age 53, unknown 63.2
Periaquaductal grey, lateral
nTPM: 76.7
2053 Male, age 18, unknown 82.4
2272 Male, age 74, both hemispheres 75.3
2140 Male, age 76, both hemispheres 72.6
Pretectal area
nTPM: 81.7
1815 Male, age 53, unknown 105.1
2316 Male, age 76, right hemisphere 104.8
1817 Female, age 42, unknown 100.9
2007 Male, age 72, unknown 80.9
2825 Male, age 18, unknown 79.8
2407 Male, age 75, both hemispheres 77.9
2667 Female, age 75, unknown 75.8
2224 Female, age 72, unknown 74.9
2273 Male, age 74, both hemispheres 71.4
1944 Female, age 72, unknown 64.5
1816 Male, age 51, unknown 62.4
Red nucleus
nTPM: 123.0
1865 Male, age 51, unknown 156.0
1904 Male, age 53, unknown 152.2
1821 Female, age 72, unknown 143.5
2823 Male, age 76, right hemisphere 132.4
2503 Female, age 72, unknown 131.2
2769 Male, age 72, unknown 121.3
1954 Female, age 42, unknown 119.5
2227 Male, age 72, unknown 117.5
2725 Female, age 75, unknown 106.0
2785 Male, age 18, unknown 105.9
2588 Male, age 74, left hemisphere 103.3
2584 Male, age 75, left hemisphere 87.0
Substantia nigra
nTPM: 92.7
2699 Male, age 18, unknown 110.3
1851 Male, age 51, unknown 102.8
2409 Female, age 72, unknown 101.3
2241 Male, age 72, unknown 99.4
1889 Female, age 72, unknown 97.4
2665 Male, age 74, both hemispheres 92.0
2590 Female, age 75, unknown 90.7
1916 Female, age 42, unknown 88.4
1941 Male, age 53, unknown 77.6
2583 Male, age 75, right hemisphere 67.3
Superior colliculus
nTPM: 92.8
1895 Male, age 76, right hemisphere 119.1
1913 Female, age 42, unknown 118.9
1995 Male, age 72, unknown 118.6
2587 Male, age 74, left hemisphere 106.5
1839 Male, age 51, unknown 95.8
2668 Female, age 75, unknown 92.4
1796 Male, age 53, unknown 79.2
2261 Male, age 18, unknown 72.8
2087 Female, age 72, unknown 65.0
2664 Male, age 75, both hemispheres 59.9
Ventral tegmental area
nTPM: 89.3
2410 Female, age 72, unknown 115.0
2223 Female, age 72, unknown 94.3
2218 Male, age 76, both hemispheres 91.8
1915 Female, age 42, unknown 86.6
1942 Male, age 51, unknown 77.5
2021 Male, age 53, unknown 71.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 93.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.4
Samples: 183

Max nTPM: 234.3
Min nTPM: 39.2
Std nTPM: 30.0
Median nTPM: 89.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 234.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 181.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 176.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 174.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 169.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 157.5
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 154.8
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 153.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 151.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 150.9
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 147.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 146.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 146.7
FF:10158-103A5 76 years, female 146.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 248.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 208.0
Samples: 4

Max nTPM: 314.7
Min nTPM: 124.9
Sample A Female 226.7
Sample B Female 124.9
Sample C Male 165.5
Sample D Male 314.7
Midbrain
nTPM: 248.9
Samples: 4

Max nTPM: 553.1
Min nTPM: 123.1
Sample A Female 553.1
Sample B Female 193.2
Sample C Male 126.1
Sample D Male 123.1
Periaqueductal gray
nTPM: 152.4
Samples: 3

Max nTPM: 165.4
Min nTPM: 126.7
Sample B Female 165.4
Sample C Male 126.7
Sample D Male 165.1
Superior colliculi
nTPM: 178.6
Samples: 4

Max nTPM: 212.2
Min nTPM: 109.7
Sample A Female 212.2
Sample B Female 109.7
Sample C Male 184.4
Sample D Male 208.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 168.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 168.0
Samples: 4

Max nTPM: 180.1
Min nTPM: 160.6
Sample A Male 164.5
Sample B Male 160.6
Sample C Female 166.9
Sample D Female 180.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
77910717 Antisense, RP_070208_04_F04, Mouse strain C57BL/6J (56 days, male) 1.2
68321904 Antisense, RP_041207_01_A07, Mouse strain C57BL/6J (56 days, male) 0.2

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