HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:38.6 nTPM
HPA Brain:100.5 nTPM
GTEx:38.6 nTPM
FANTOM5:75.3 Scaled Tags Per Million
Pig:73.9 nTPM
Mouse:27.6 nTPM
Allen mouse:6.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA053057
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 100.5
Sample id Sample description nTPM
Hippocampus
nTPM: 74.8
1898 Male, age 80, left hemisphere 88.8
2621 Female, age 67, right hemisphere 86.8
2148 Female, age 91, left hemisphere 85.0
1855 Male, age 76, left hemisphere 64.5
2529 Female, age 94, left hemisphere 63.7
1911 Female, age 85, right hemisphere 60.1
Dentate gyrus
nTPM: 84.5
1927 Female, age 91, both hemispheres 106.7
2531 Female, age 67, both hemispheres 100.3
2246 Female, age 85, both hemispheres 83.3
2528 Male, age 74, both hemispheres 76.7
2010 Male, age 76, both hemispheres 70.2
2530 Female, age 94, left hemisphere 69.8
Entorhinal gyrus
nTPM: 71.9
2764 Male, age 80, right hemisphere 89.0
1938 Female, age 85, left hemisphere 75.1
2613 Female, age 94, left hemisphere 71.9
1787 Male, age 76, left hemisphere 68.6
2686 Male, age 75, right hemisphere 66.7
2117 Female, age 91, right hemisphere 59.8
Hippocampus, CA1
nTPM: 84.3
2749 Male, age 80, left hemisphere 110.1
1873 Female, age 85, both hemispheres 82.6
2527 Male, age 74, both hemispheres 78.9
2045 Male, age 76, both hemispheres 78.2
2082 Female, age 91, right hemisphere 71.9
Hippocampus, CA2
nTPM: 69.4
1963 Male, age 80, left hemisphere 77.6
2113 Female, age 91, right hemisphere 71.0
1892 Male, age 76, both hemispheres 69.6
2437 Female, age 94, left hemisphere 67.6
1940 Female, age 85, left hemisphere 66.3
2249 Male, age 74, both hemispheres 64.3
Hippocampus, CA3
nTPM: 77.2
2620 Female, age 94, left hemisphere 114.0
2861 Female, age 67, both hemispheres 87.8
2137 Male, age 80, left hemisphere 82.0
2436 Male, age 74, both hemispheres 64.7
1891 Female, age 85, both hemispheres 59.0
1867 Male, age 76, both hemispheres 56.0
Parahippocampal cortex
nTPM: 80.4
2693 Female, age 94, both hemispheres 96.6
2245 Female, age 91, both hemispheres 91.9
1850 Male, age 80, both hemispheres 90.6
2622 Female, age 67, right hemisphere 86.0
1933 Female, age 85, both hemispheres 83.9
2532 Female, age 72, left hemisphere 82.9
2250 Female, age 67, right hemisphere 80.6
1990 Female, age 91, right hemisphere 78.6
2018 Male, age 76, both hemispheres 58.9
2692 Male, age 74, both hemispheres 54.1
Perirhinal gyrus
nTPM: 100.5
1794 Male, age 80, right hemisphere 117.4
1847 Female, age 91, left hemisphere 105.8
1841 Female, age 85, right hemisphere 103.8
2521 Female, age 94, right hemisphere 99.1
2848 Male, age 76, right hemisphere 76.3
Subiculum
nTPM: 60.7
1977 Female, age 85, both hemispheres 77.1
2619 Male, age 74, both hemispheres 70.0
2729 Female, age 91, right hemisphere 68.3
2438 Female, age 94, left hemisphere 57.1
1901 Male, age 80, both hemispheres 54.0
2042 Male, age 76, both hemispheres 37.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 38.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.6
Samples: 255

Max nTPM: 98.2
Min nTPM: 3.2
Std nTPM: 20.1
Median nTPM: 37.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 98.2
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 91.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 88.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 85.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 84.4
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 79.0
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 78.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 78.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 77.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 76.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 76.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 75.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 75.3
FF:10169-103B7 60 years, female 88.2
FF:10153-102I9 76 years, female 62.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 73.9
Pig sample Sample description nTPM
Subiculum
nTPM: 61.3
Samples: 4

Max nTPM: 73.7
Min nTPM: 55.1
Sample A Female 73.7
Sample B Female 57.4
Sample C Male 59.0
Sample D Male 55.1
Dorsal hippocampus
nTPM: 73.9
Samples: 4

Max nTPM: 88.1
Min nTPM: 62.9
Sample A Female 88.1
Sample B Female 79.2
Sample C Male 62.9
Sample D Male 65.2
Entorhinal cortex
nTPM: 69.3
Samples: 4

Max nTPM: 74.0
Min nTPM: 65.1
Sample A Female 70.2
Sample B Female 74.0
Sample C Male 65.1
Sample D Male 67.7
Ventral hippocampus
nTPM: 66.8
Samples: 4

Max nTPM: 84.3
Min nTPM: 49.3
Sample A Female 60.2
Sample B Female 49.3
Sample C Male 73.3
Sample D Male 84.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 27.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 27.7
Samples: 4

Max nTPM: 32.2
Min nTPM: 25.0
Sample A Male 26.9
Sample B Male 26.5
Sample C Female 25.0
Sample D Female 32.2
Hippocampal formation
nTPM: 25.2
Samples: 4

Max nTPM: 30.3
Min nTPM: 21.9
Sample A Male 30.3
Sample B Male 21.9
Sample C Female 23.0
Sample D Female 25.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 6.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.9
69013017 Antisense, RP_050309_01_H02, Mouse strain C57BL/6J (56 days, male) 13.8
70301086 Antisense, RP_050309_01_H02, Mouse strain C57BL/6J (56 days, male) 5.1
70228603 Antisense, RP_050524_04_A05, Mouse strain C57BL/6J (56 days, male) 0.1

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