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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:45.2 nTPM
HPA Brain:89.7 nTPM
GTEx:45.2 nTPM
FANTOM5:86.0 Scaled Tags Per Million
Pig:56.2 nTPM
Mouse:32.2 nTPM
Allen mouse:5.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.7
Sample id Sample description nTPM
Amygdala
nTPM: 64.2
1987 Female, age 91, left hemisphere 82.7
2514 Male, age 75, right hemisphere 63.0
2517 Female, age 94, left hemisphere 62.5
2814 Male, age 76, right hemisphere 62.3
2695 Female, age 67, right hemisphere 50.4
Basal amygdala
nTPM: 80.3
2243 Female, age 91, right hemisphere 110.8
2685 Female, age 94, left hemisphere 88.9
2110 Male, age 80, left hemisphere 88.5
2609 Male, age 75, right hemisphere 77.1
1955 Male, age 76, both hemispheres 67.4
2827 Female, age 67, right hemisphere 48.9
Central amygdala
nTPM: 80.4
2701 Female, age 91, right hemisphere 101.3
2239 Male, age 80, left hemisphere 86.7
2515 Male, age 75, right hemisphere 86.4
1905 Male, age 76, both hemispheres 65.0
2826 Female, age 94, left hemisphere 62.4
Corticomedial amygdala
nTPM: 89.7
2242 Female, age 91, right hemisphere 113.4
2829 Male, age 80, left hemisphere 94.8
2429 Female, age 94, left hemisphere 91.6
2535 Female, age 67, right hemisphere 85.6
2240 Male, age 76, both hemispheres 77.3
2428 Male, age 75, right hemisphere 75.4
Lateral amygdala
nTPM: 68.8
2255 Female, age 91, right hemisphere 96.6
2534 Female, age 94, left hemisphere 88.5
2256 Male, age 80, left hemisphere 79.8
1883 Male, age 76, both hemispheres 65.4
2516 Male, age 75, right hemisphere 54.4
2830 Female, age 67, right hemisphere 28.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 45.2
Samples: 181

Max nTPM: 91.7
Min nTPM: 14.6
Std nTPM: 14.3
Median nTPM: 45.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 91.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 85.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 81.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 76.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 75.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 73.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 73.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 73.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 72.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 72.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 71.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 71.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 68.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 68.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 67.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 64.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 64.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 62.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 62.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 62.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 61.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 61.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 61.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 59.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 59.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 59.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 58.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 58.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 58.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 58.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 57.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 56.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 56.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 56.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 55.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 55.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 55.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 54.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 54.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 54.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 54.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 54.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 54.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 53.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 53.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 53.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 53.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 53.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 53.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 53.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 52.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 52.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 52.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 51.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 51.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 51.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 51.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 51.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 51.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 50.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 49.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 49.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 49.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 49.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 49.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 49.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 49.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 49.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 48.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 48.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 48.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 48.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 48.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 48.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 48.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 47.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 47.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 46.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 46.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 46.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 46.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 46.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 46.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 46.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 46.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 46.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 45.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 45.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 45.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 45.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 45.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 45.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 44.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 44.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 44.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 43.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 43.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 43.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 42.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 42.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 42.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 42.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 42.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 42.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 42.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 41.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 41.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 41.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 41.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 40.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 40.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 40.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 40.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 40.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 40.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 39.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 39.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 39.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 39.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 38.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 38.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 38.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 38.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 38.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 38.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 38.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 37.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 37.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 37.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 37.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 37.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 36.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 36.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 36.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 36.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 36.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 35.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 35.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 35.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 35.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 35.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 34.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 34.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 34.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 33.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 33.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 32.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 32.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 32.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 32.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 31.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 31.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 31.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 31.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 31.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 30.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 30.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 29.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 29.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 29.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 28.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 28.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 26.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 26.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 25.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 25.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 24.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 23.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 23.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 23.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 22.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 21.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 21.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 20.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 18.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 17.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 17.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 16.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 16.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 16.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 14.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 86.0
FF:10151-102I7 76 years, female 86.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.2
Pig sample Sample description nTPM
Amygdala
nTPM: 56.3
Samples: 4

Max nTPM: 66.0
Min nTPM: 49.9
Sample A Female 66.0
Sample B Female 49.9
Sample C Male 51.5
Sample D Male 57.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 32.2
Samples: 4

Max nTPM: 34.8
Min nTPM: 27.5
Sample A Male 34.8
Sample B Male 33.1
Sample C Female 27.5
Sample D Female 33.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.1
69013017 Antisense, RP_050309_01_H02, Mouse strain C57BL/6J (56 days, male) 10.3
70301086 Antisense, RP_050309_01_H02, Mouse strain C57BL/6J (56 days, male) 6.2
70228603 Antisense, RP_050524_04_A05, Mouse strain C57BL/6J (56 days, male) 0.0

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