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  • MAL2
TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:98.7 nTPM
GTEx:98.7 nTPM
FANTOM5:21.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA043831
Squamous epithelial cells Not detected



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 98.7
Samples: 170

Max nTPM: 356.1
Min nTPM: 0.0
Std nTPM: 90.0
Median nTPM: 87.9
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 356.1
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 335.8
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 318.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 300.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 289.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 284.4
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 279.9
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 268.8
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 264.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 260.9
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 259.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 256.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 249.8
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 241.5
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 226.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 225.6
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 224.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 224.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 221.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 220.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 218.8
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 211.4
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 209.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 206.4
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 203.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 200.0
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 195.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 193.3
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 191.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 188.2
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 187.1
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 185.7
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 185.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 182.8
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 182.7
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 180.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 173.1
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 169.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 168.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 168.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 163.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 162.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 157.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 157.0
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 155.6
GTEX-1C475-0526-SM-793AC 40-49 years, female 155.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 154.4
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 153.2
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 152.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 152.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 150.6
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 150.4
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 146.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 146.5
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 145.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 142.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 141.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 139.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 139.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 131.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 129.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 129.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 128.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 128.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 127.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 127.5
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 123.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 123.3
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 122.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 121.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 117.0
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 115.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 112.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 112.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 106.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 106.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 104.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 104.3
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 103.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 102.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 100.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 99.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 95.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 94.8
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 94.1
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 81.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 80.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 76.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 75.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 75.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 74.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 71.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 69.2
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 66.4
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 64.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 60.7
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 58.0
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 55.7
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 55.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 50.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 50.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 49.0
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 48.9
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 48.1
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 47.0
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 45.4
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 43.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 42.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 36.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 33.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 30.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 28.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 27.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 22.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 21.3
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 21.0
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 19.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 18.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 17.9
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 15.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 14.4
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 13.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 13.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 12.5
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 11.3
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 10.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 9.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 9.1
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 8.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 8.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 8.0
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 6.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 6.5
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 4.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 3.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 3.6
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 3.3
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 3.1
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 2.9
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1.2
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1.1
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 0.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 0.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 0.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 0.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 0.4
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 0.4
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 0.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 0.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 0.3
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 0.3
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 0.3
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 0.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 0.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 0.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 0.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 0.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 0.2
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 0.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 0.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 0.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 0.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 0.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 0.1
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 0.1
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 0.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 0.0
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 0.0
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 0.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

21.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 21.2
FF:10204-103F6 68 years, female 21.2

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