MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.8 nTPM
HPA Brain:76.5 nTPM
GTEx:40.8 nTPM
FANTOM5:123.6 Scaled Tags Per Million
Pig:16.0 nTPM
Mouse:91.9 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 76.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.2
2828 Female, age 72, unknown 71.2
1870 Female, age 42, unknown 70.8
2586 Male, age 75, left hemisphere 69.3
1833 Male, age 53, unknown 63.4
2411 Female, age 72, unknown 62.7
1827 Male, age 72, unknown 60.5
1830 Male, age 51, unknown 58.5
2019 Male, age 18, unknown 57.7
2219 Male, age 76, both hemispheres 52.9
2666 Male, age 74, left hemisphere 45.1
Dorsal raphe nucleus
nTPM: 76.5
2016 Female, age 72, unknown 86.3
2298 Female, age 72, unknown 83.3
2047 Male, age 72, unknown 74.8
1828 Male, age 53, unknown 71.2
2750 Male, age 76, both hemispheres 66.6
Inferior colliculus
nTPM: 75.9
2097 Female, age 72, unknown 78.4
1848 Female, age 42, unknown 77.8
1890 Male, age 53, unknown 77.5
2849 Male, age 72, unknown 70.1
Median raphe nucleus
nTPM: 64.5
2220 Male, age 76, midline 64.5
Periaquaductal grey, anterior
nTPM: 70.1
2502 Female, age 75, unknown 74.6
1947 Male, age 18, unknown 70.0
1795 Male, age 51, unknown 65.8
Periaquaductal grey, dorsal
nTPM: 70.9
1840 Male, age 53, unknown 84.3
2850 Male, age 76, both hemispheres 76.5
2464 Female, age 72, unknown 65.4
1831 Male, age 72, unknown 57.4
Periaquaductal grey, lateral
nTPM: 73.4
2272 Male, age 74, both hemispheres 82.9
2140 Male, age 76, both hemispheres 72.0
2053 Male, age 18, unknown 65.4
Pretectal area
nTPM: 66.6
2667 Female, age 75, unknown 81.9
2224 Female, age 72, unknown 80.3
2273 Male, age 74, both hemispheres 80.0
1944 Female, age 72, unknown 71.2
2825 Male, age 18, unknown 68.8
2316 Male, age 76, right hemisphere 65.4
1816 Male, age 51, unknown 63.0
2007 Male, age 72, unknown 58.0
1815 Male, age 53, unknown 57.0
1817 Female, age 42, unknown 56.7
2407 Male, age 75, both hemispheres 49.8
Red nucleus
nTPM: 67.9
2769 Male, age 72, unknown 75.5
2503 Female, age 72, unknown 75.3
1821 Female, age 72, unknown 73.8
1954 Female, age 42, unknown 73.8
2227 Male, age 72, unknown 73.3
1904 Male, age 53, unknown 72.5
2823 Male, age 76, right hemisphere 70.9
1865 Male, age 51, unknown 69.7
2725 Female, age 75, unknown 66.5
2785 Male, age 18, unknown 60.8
2588 Male, age 74, left hemisphere 57.0
2584 Male, age 75, left hemisphere 45.6
Substantia nigra
nTPM: 69.9
2409 Female, age 72, unknown 87.0
2699 Male, age 18, unknown 83.3
1916 Female, age 42, unknown 79.0
2241 Male, age 72, unknown 78.6
1851 Male, age 51, unknown 75.0
1889 Female, age 72, unknown 70.9
2583 Male, age 75, right hemisphere 60.6
1941 Male, age 53, unknown 58.6
2590 Female, age 75, unknown 55.9
2665 Male, age 74, both hemispheres 50.1
Superior colliculus
nTPM: 62.8
1995 Male, age 72, unknown 68.5
1913 Female, age 42, unknown 66.9
1796 Male, age 53, unknown 66.5
2087 Female, age 72, unknown 65.2
1895 Male, age 76, right hemisphere 65.0
2261 Male, age 18, unknown 64.2
1839 Male, age 51, unknown 61.9
2587 Male, age 74, left hemisphere 58.8
2668 Female, age 75, unknown 58.7
2664 Male, age 75, both hemispheres 52.1
Ventral tegmental area
nTPM: 69.4
1915 Female, age 42, unknown 78.8
1942 Male, age 51, unknown 71.5
2218 Male, age 76, both hemispheres 69.8
2021 Male, age 53, unknown 68.3
2223 Female, age 72, unknown 65.5
2410 Female, age 72, unknown 62.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.8
Samples: 183

Max nTPM: 89.8
Min nTPM: 15.1
Std nTPM: 12.8
Median nTPM: 38.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 89.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 82.0
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 81.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 76.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 71.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 69.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 66.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 66.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 66.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 65.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 65.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 123.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 123.6
FF:10158-103A5 76 years, female 123.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.4
Samples: 4

Max nTPM: 12.8
Min nTPM: 11.8
Sample A Female 11.8
Sample B Female 12.8
Sample C Male 12.4
Sample D Male 12.4
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 19.7
Min nTPM: 13.7
Sample A Female 13.7
Sample B Female 14.3
Sample C Male 19.7
Sample D Male 15.1
Periaqueductal gray
nTPM: 14.9
Samples: 3

Max nTPM: 15.8
Min nTPM: 14.1
Sample B Female 14.1
Sample C Male 15.8
Sample D Male 14.7
Superior colliculi
nTPM: 16.0
Samples: 4

Max nTPM: 20.1
Min nTPM: 13.9
Sample A Female 15.0
Sample B Female 13.9
Sample C Male 20.1
Sample D Male 15.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 91.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.0
Samples: 4

Max nTPM: 96.6
Min nTPM: 85.6
Sample A Male 90.3
Sample B Male 85.6
Sample C Female 96.6
Sample D Female 95.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
70429160 Antisense, RP_050614_01_B04, Mouse strain C57BL/6J (56 days, male) 0.8

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