MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.6 nTPM
HPA Brain:22.9 nTPM
GTEx:11.6 nTPM
FANTOM5:7.1 Scaled Tags Per Million
Pig:13.2 nTPM
Mouse:26.5 nTPM
Allen mouse:1.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.0
2019 Male, age 18, unknown 20.2
2411 Female, age 72, unknown 20.2
1870 Female, age 42, unknown 19.5
1833 Male, age 53, unknown 19.2
2219 Male, age 76, both hemispheres 17.6
1827 Male, age 72, unknown 17.1
1830 Male, age 51, unknown 17.0
2828 Female, age 72, unknown 14.6
2666 Male, age 74, left hemisphere 13.9
2586 Male, age 75, left hemisphere 10.7
Dorsal raphe nucleus
nTPM: 22.9
2298 Female, age 72, unknown 28.6
2016 Female, age 72, unknown 23.3
1828 Male, age 53, unknown 22.6
2047 Male, age 72, unknown 21.6
2750 Male, age 76, both hemispheres 18.3
Inferior colliculus
nTPM: 17.2
2097 Female, age 72, unknown 21.0
1890 Male, age 53, unknown 17.1
1848 Female, age 42, unknown 16.8
2849 Male, age 72, unknown 13.8
Median raphe nucleus
nTPM: 22.9
2220 Male, age 76, midline 22.9
Periaquaductal grey, anterior
nTPM: 19.4
1947 Male, age 18, unknown 21.6
1795 Male, age 51, unknown 18.7
2502 Female, age 75, unknown 17.7
Periaquaductal grey, dorsal
nTPM: 20.9
2850 Male, age 76, both hemispheres 27.6
1840 Male, age 53, unknown 21.7
2464 Female, age 72, unknown 18.0
1831 Male, age 72, unknown 16.4
Periaquaductal grey, lateral
nTPM: 22.7
2140 Male, age 76, both hemispheres 25.8
2272 Male, age 74, both hemispheres 24.8
2053 Male, age 18, unknown 17.4
Pretectal area
nTPM: 19.5
2273 Male, age 74, both hemispheres 30.3
2224 Female, age 72, unknown 22.7
1816 Male, age 51, unknown 19.9
2007 Male, age 72, unknown 19.8
1944 Female, age 72, unknown 18.7
2825 Male, age 18, unknown 18.3
1817 Female, age 42, unknown 18.0
2407 Male, age 75, both hemispheres 17.5
2316 Male, age 76, right hemisphere 16.6
2667 Female, age 75, unknown 16.4
1815 Male, age 53, unknown 16.2
Red nucleus
nTPM: 16.9
1821 Female, age 72, unknown 22.6
2785 Male, age 18, unknown 18.4
1954 Female, age 42, unknown 18.2
1904 Male, age 53, unknown 17.5
1865 Male, age 51, unknown 17.3
2725 Female, age 75, unknown 17.2
2227 Male, age 72, unknown 16.8
2769 Male, age 72, unknown 16.3
2503 Female, age 72, unknown 15.4
2584 Male, age 75, left hemisphere 14.5
2823 Male, age 76, right hemisphere 14.3
2588 Male, age 74, left hemisphere 14.1
Substantia nigra
nTPM: 21.1
2241 Male, age 72, unknown 32.9
1916 Female, age 42, unknown 23.5
2590 Female, age 75, unknown 21.5
1889 Female, age 72, unknown 20.6
1851 Male, age 51, unknown 20.2
2583 Male, age 75, right hemisphere 20.1
1941 Male, age 53, unknown 19.8
2409 Female, age 72, unknown 19.6
2699 Male, age 18, unknown 17.1
2665 Male, age 74, both hemispheres 16.0
Superior colliculus
nTPM: 16.9
2668 Female, age 75, unknown 20.1
2587 Male, age 74, left hemisphere 18.8
2261 Male, age 18, unknown 18.6
2087 Female, age 72, unknown 17.5
1895 Male, age 76, right hemisphere 17.0
1995 Male, age 72, unknown 16.5
1796 Male, age 53, unknown 16.3
1839 Male, age 51, unknown 16.3
1913 Female, age 42, unknown 14.7
2664 Male, age 75, both hemispheres 13.0
Ventral tegmental area
nTPM: 18.6
1915 Female, age 42, unknown 20.7
2410 Female, age 72, unknown 19.7
1942 Male, age 51, unknown 18.6
2021 Male, age 53, unknown 18.6
2218 Male, age 76, both hemispheres 18.1
2223 Female, age 72, unknown 16.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.6
Samples: 183

Max nTPM: 23.9
Min nTPM: 5.2
Std nTPM: 3.6
Median nTPM: 11.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 23.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 22.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 21.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 21.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 20.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 20.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 19.9
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 19.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 19.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 19.0
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 19.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 7.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.1
FF:10158-103A5 76 years, female 7.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.2
Samples: 4

Max nTPM: 16.4
Min nTPM: 9.4
Sample A Female 16.4
Sample B Female 11.8
Sample C Male 15.1
Sample D Male 9.4
Midbrain
nTPM: 12.3
Samples: 4

Max nTPM: 13.5
Min nTPM: 9.0
Sample A Female 9.0
Sample B Female 13.4
Sample C Male 13.5
Sample D Male 13.2
Periaqueductal gray
nTPM: 12.2
Samples: 3

Max nTPM: 14.2
Min nTPM: 10.6
Sample B Female 10.6
Sample C Male 14.2
Sample D Male 11.9
Superior colliculi
nTPM: 10.4
Samples: 4

Max nTPM: 12.1
Min nTPM: 7.7
Sample A Female 12.1
Sample B Female 7.7
Sample C Male 11.0
Sample D Male 10.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.5
Samples: 4

Max nTPM: 27.9
Min nTPM: 25.7
Sample A Male 25.7
Sample B Male 27.9
Sample C Female 26.4
Sample D Female 25.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
69549264 Antisense, RP_050126_02_A06, Mouse strain C57BL/6J (56 days, male) 1.4

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