We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GSN
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • GSN
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:507.4 nTPM
HPA Brain:496.5 nTPM
GTEx:507.4 nTPM
FANTOM5:432.9 Scaled Tags Per Million
Pig:358.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

496.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 445.6
1981 Female, age 72, midline 601.3
2048 Male, age 55, midline 456.9
2816 Male, age 47, midline 452.4
2194 Female, age 79, both hemispheres 405.8
2565 Male, age 75, midline 311.8
Cervical spinal cord, dorsal horn
nTPM: 454.5
2173 Female, age 72, unknown 763.4
2296 Male, age 66, both hemispheres 618.3
2069 Male, age 47, both hemispheres 448.0
1877 Male, age 55, unknown 411.3
2721 Male, age 90, both hemispheres 277.9
2297 Male, age 75, both hemispheres 208.2
Cervical spinal cord, ventral horn
nTPM: 496.5
2098 Female, age 72, unknown 818.3
2068 Male, age 55, unknown 571.3
2809 Male, age 90, both hemispheres 442.0
2820 Female, age 79, both hemispheres 420.2
2295 Male, age 66, both hemispheres 391.8
2480 Male, age 75, both hemispheres 335.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

507.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 507.4
Samples: 204

Max nTPM: 1060.9
Min nTPM: 133.7
Std nTPM: 162.3
Median nTPM: 507.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1060.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 839.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 829.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 826.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 806.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 798.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 785.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 772.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 767.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 759.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 757.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 753.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 745.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 743.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 740.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 738.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 735.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 734.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 734.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 726.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 725.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 719.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 716.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 706.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 706.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 704.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 702.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 698.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 698.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 698.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 696.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 696.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 693.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 684.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 679.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 677.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 671.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 669.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 660.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 651.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 651.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 650.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 648.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 648.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 643.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 642.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 639.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 630.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 629.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 628.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 627.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 623.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 621.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 617.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 616.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 616.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 613.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 613.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 610.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 606.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 605.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 602.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 600.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 599.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 591.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 590.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 586.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 585.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 585.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 584.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 582.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 581.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 579.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 575.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 572.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 569.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 568.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 565.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 562.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 558.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 556.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 555.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 555.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 553.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 538.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 538.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 538.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 535.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 534.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 534.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 532.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 531.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 529.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 529.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 528.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 528.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 526.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 525.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 519.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 511.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 510.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 508.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 506.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 504.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 500.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 499.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 493.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 489.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 489.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 488.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 486.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 486.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 483.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 482.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 479.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 476.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 476.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 476.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 465.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 464.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 461.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 459.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 458.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 457.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 456.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 455.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 455.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 448.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 448.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 446.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 438.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 434.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 432.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 430.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 425.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 425.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 424.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 423.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 420.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 419.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 418.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 418.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 416.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 415.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 414.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 409.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 407.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 407.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 391.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 389.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 389.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 384.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 382.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 381.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 374.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 370.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 367.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 357.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 349.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 347.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 346.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 345.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 344.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 342.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 336.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 336.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 333.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 331.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 331.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 331.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 330.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 328.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 327.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 321.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 321.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 318.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 313.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 310.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 307.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 305.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 301.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 301.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 298.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 297.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 294.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 293.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 288.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 285.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 283.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 277.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 274.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 272.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 270.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 269.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 268.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 265.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 258.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 253.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 241.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 192.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 178.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 163.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 151.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 133.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

432.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 432.9
FF:10181-103D1 60 years, female 561.8
FF:10159-103A6 76 years, female 303.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

358.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 342.3
Samples: 4

Max nTPM: 460.2
Min nTPM: 295.3
Sample A Female 295.3
Sample B Female 302.3
Sample C Male 460.2
Sample D Male 311.5
Ventral spinal cord
nTPM: 358.5
Samples: 4

Max nTPM: 417.2
Min nTPM: 306.2
Sample A Female 360.1
Sample B Female 306.2
Sample C Male 350.5
Sample D Male 417.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo