MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:288.4 nTPM
HPA Brain:513.2 nTPM
GTEx:288.4 nTPM
FANTOM5:538.3 Scaled Tags Per Million
Pig:175.2 nTPM
Mouse:128.1 nTPM
Allen mouse:6.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 513.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 409.8
2019 Male, age 18, unknown 548.7
2411 Female, age 72, unknown 502.8
1870 Female, age 42, unknown 498.4
1830 Male, age 51, unknown 493.7
1833 Male, age 53, unknown 447.9
2828 Female, age 72, unknown 412.0
2586 Male, age 75, left hemisphere 369.4
1827 Male, age 72, unknown 295.5
2219 Male, age 76, both hemispheres 265.4
2666 Male, age 74, left hemisphere 264.2
Dorsal raphe nucleus
nTPM: 324.0
2750 Male, age 76, both hemispheres 484.7
2016 Female, age 72, unknown 338.8
1828 Male, age 53, unknown 317.5
2047 Male, age 72, unknown 241.2
2298 Female, age 72, unknown 237.6
Inferior colliculus
nTPM: 270.7
1890 Male, age 53, unknown 309.2
1848 Female, age 42, unknown 292.3
2097 Female, age 72, unknown 242.9
2849 Male, age 72, unknown 238.2
Median raphe nucleus
nTPM: 337.1
2220 Male, age 76, midline 337.1
Periaquaductal grey, anterior
nTPM: 276.3
2502 Female, age 75, unknown 311.4
1795 Male, age 51, unknown 265.1
1947 Male, age 18, unknown 252.4
Periaquaductal grey, dorsal
nTPM: 265.5
2850 Male, age 76, both hemispheres 338.9
2464 Female, age 72, unknown 294.2
1831 Male, age 72, unknown 261.4
1840 Male, age 53, unknown 167.5
Periaquaductal grey, lateral
nTPM: 345.2
2140 Male, age 76, both hemispheres 399.7
2272 Male, age 74, both hemispheres 335.3
2053 Male, age 18, unknown 300.7
Pretectal area
nTPM: 300.6
2316 Male, age 76, right hemisphere 407.5
2273 Male, age 74, both hemispheres 400.7
2667 Female, age 75, unknown 356.1
1815 Male, age 53, unknown 346.1
2407 Male, age 75, both hemispheres 319.8
1817 Female, age 42, unknown 304.2
2007 Male, age 72, unknown 280.4
2825 Male, age 18, unknown 280.2
2224 Female, age 72, unknown 255.8
1944 Female, age 72, unknown 192.2
1816 Male, age 51, unknown 163.6
Red nucleus
nTPM: 513.2
1904 Male, age 53, unknown 624.0
2769 Male, age 72, unknown 622.1
1865 Male, age 51, unknown 619.0
2227 Male, age 72, unknown 616.4
2785 Male, age 18, unknown 596.2
1954 Female, age 42, unknown 566.7
1821 Female, age 72, unknown 544.1
2503 Female, age 72, unknown 494.3
2823 Male, age 76, right hemisphere 468.9
2588 Male, age 74, left hemisphere 347.9
2584 Male, age 75, left hemisphere 338.8
2725 Female, age 75, unknown 319.6
Substantia nigra
nTPM: 337.6
1851 Male, age 51, unknown 426.9
2583 Male, age 75, right hemisphere 411.2
2590 Female, age 75, unknown 392.7
2409 Female, age 72, unknown 387.3
2699 Male, age 18, unknown 365.5
1916 Female, age 42, unknown 304.8
1889 Female, age 72, unknown 296.9
1941 Male, age 53, unknown 284.1
2241 Male, age 72, unknown 266.2
2665 Male, age 74, both hemispheres 240.1
Superior colliculus
nTPM: 322.8
1995 Male, age 72, unknown 503.5
1913 Female, age 42, unknown 462.9
2587 Male, age 74, left hemisphere 371.7
1839 Male, age 51, unknown 322.2
2668 Female, age 75, unknown 296.0
1796 Male, age 53, unknown 294.0
2664 Male, age 75, both hemispheres 257.4
1895 Male, age 76, right hemisphere 255.5
2087 Female, age 72, unknown 244.8
2261 Male, age 18, unknown 220.0
Ventral tegmental area
nTPM: 411.3
2223 Female, age 72, unknown 585.1
2410 Female, age 72, unknown 434.7
2021 Male, age 53, unknown 389.5
1942 Male, age 51, unknown 361.2
1915 Female, age 42, unknown 354.6
2218 Male, age 76, both hemispheres 343.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 288.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 288.4
Samples: 183

Max nTPM: 821.6
Min nTPM: 47.3
Std nTPM: 120.0
Median nTPM: 259.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 821.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 708.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 676.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 629.3
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 624.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 583.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 578.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 558.5
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 543.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 506.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 501.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 538.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 538.3
FF:10158-103A5 76 years, female 538.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 175.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 165.8
Samples: 4

Max nTPM: 208.8
Min nTPM: 117.2
Sample A Female 137.7
Sample B Female 208.8
Sample C Male 117.2
Sample D Male 199.4
Midbrain
nTPM: 168.0
Samples: 4

Max nTPM: 430.0
Min nTPM: 57.5
Sample A Female 430.0
Sample B Female 97.7
Sample C Male 86.8
Sample D Male 57.5
Periaqueductal gray
nTPM: 109.1
Samples: 3

Max nTPM: 124.0
Min nTPM: 94.7
Sample B Female 94.7
Sample C Male 108.5
Sample D Male 124.0
Superior colliculi
nTPM: 175.3
Samples: 4

Max nTPM: 301.1
Min nTPM: 118.7
Sample A Female 161.9
Sample B Female 301.1
Sample C Male 118.7
Sample D Male 119.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 128.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.1
Samples: 4

Max nTPM: 149.9
Min nTPM: 108.8
Sample A Male 118.2
Sample B Male 108.8
Sample C Female 135.4
Sample D Female 149.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.0
72081395 Antisense, RP_051017_01_C01, Mouse strain C57BL/6J (56 days, male) 9.8
68444642 Antisense, RP_050111_02_C03, Mouse strain C57BL/6J (56 days, male) 2.2

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