HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		22.810
RNA expressioni
Consensus:6.0 nTPM
HPA Brain:39.8 nTPM
GTEx:6.0 nTPM
FANTOM5:18.6 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:2.0 nTPM
Allen mouse:1.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043674
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA043674
Hippocampal formation mean intensity 22.810
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 22.810
Molecular layer of the dentate gyrus 9.008
Granular dentate gyrus 17.704
CA1 - oriens layer 1.224
CA1 - pyramidal layer 4.209
CA1 - radiatum layer 3.918
CA2 - oriens layer 1.180
CA2 - pyramidal layer 4.628
CA2 - radiatum layer 3.771
CA3 - oriens layer 2.129
CA3 - pyramidal layer 8.118
CA3 - radiatum layer 4.924
Stratum lucidum 7.491
Lacunosum moleculare 4.479
Subiculum 4.246

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 39.8
Sample id Sample description nTPM
Hippocampus
nTPM: 33.1
2529 Female, age 94, left hemisphere 44.2
1898 Male, age 80, left hemisphere 37.5
2148 Female, age 91, left hemisphere 33.1
1911 Female, age 85, right hemisphere 32.7
1855 Male, age 76, left hemisphere 28.9
2621 Female, age 67, right hemisphere 22.6
Dentate gyrus
nTPM: 30.7
2528 Male, age 74, both hemispheres 45.8
2010 Male, age 76, both hemispheres 33.7
2530 Female, age 94, left hemisphere 33.0
2246 Female, age 85, both hemispheres 28.7
1927 Female, age 91, both hemispheres 21.7
2531 Female, age 67, both hemispheres 21.7
Entorhinal gyrus
nTPM: 35.3
2117 Female, age 91, right hemisphere 63.9
2764 Male, age 80, right hemisphere 42.0
2686 Male, age 75, right hemisphere 30.4
1787 Male, age 76, left hemisphere 25.9
1938 Female, age 85, left hemisphere 25.7
2613 Female, age 94, left hemisphere 24.1
Hippocampus, CA1
nTPM: 27.4
2082 Female, age 91, right hemisphere 38.1
2527 Male, age 74, both hemispheres 36.1
1873 Female, age 85, both hemispheres 29.3
2749 Male, age 80, left hemisphere 17.1
2045 Male, age 76, both hemispheres 16.3
Hippocampus, CA2
nTPM: 35.1
1940 Female, age 85, left hemisphere 47.1
2249 Male, age 74, both hemispheres 44.0
1963 Male, age 80, left hemisphere 38.0
2113 Female, age 91, right hemisphere 34.9
2437 Female, age 94, left hemisphere 31.2
1892 Male, age 76, both hemispheres 15.6
Hippocampus, CA3
nTPM: 26.7
1891 Female, age 85, both hemispheres 37.8
2436 Male, age 74, both hemispheres 32.8
2620 Female, age 94, left hemisphere 31.6
2861 Female, age 67, both hemispheres 24.9
2137 Male, age 80, left hemisphere 17.1
1867 Male, age 76, both hemispheres 16.1
Parahippocampal cortex
nTPM: 26.5
2692 Male, age 74, both hemispheres 37.1
1990 Female, age 91, right hemisphere 33.3
2622 Female, age 67, right hemisphere 28.4
1850 Male, age 80, both hemispheres 25.4
2250 Female, age 67, right hemisphere 25.1
1933 Female, age 85, both hemispheres 25.0
2245 Female, age 91, both hemispheres 23.5
2018 Male, age 76, both hemispheres 23.0
2532 Female, age 72, left hemisphere 22.6
2693 Female, age 94, both hemispheres 21.7
Perirhinal gyrus
nTPM: 20.7
2521 Female, age 94, right hemisphere 25.5
1794 Male, age 80, right hemisphere 23.9
2848 Male, age 76, right hemisphere 19.1
1847 Female, age 91, left hemisphere 19.0
1841 Female, age 85, right hemisphere 16.3
Subiculum
nTPM: 39.8
2042 Male, age 76, both hemispheres 56.1
2729 Female, age 91, right hemisphere 45.4
2619 Male, age 74, both hemispheres 41.6
1901 Male, age 80, both hemispheres 40.4
1977 Female, age 85, both hemispheres 34.3
2438 Female, age 94, left hemisphere 20.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 6.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 6.0
Samples: 255

Max nTPM: 18.1
Min nTPM: 1.0
Std nTPM: 3.2
Median nTPM: 5.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 18.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 16.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 16.7
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 15.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 15.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 15.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 15.1
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 15.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 14.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 14.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 14.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 18.6
FF:10153-102I9 76 years, female 24.7
FF:10169-103B7 60 years, female 12.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 5.0
Pig sample Sample description nTPM
Subiculum
nTPM: 5.0
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.5
Sample A Female 4.8
Sample B Female 5.2
Sample C Male 5.6
Sample D Male 4.5
Dorsal hippocampus
nTPM: 2.6
Samples: 4

Max nTPM: 3.6
Min nTPM: 1.7
Sample A Female 3.0
Sample B Female 2.2
Sample C Male 3.6
Sample D Male 1.7
Entorhinal cortex
nTPM: 3.2
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.3
Sample A Female 3.5
Sample B Female 2.3
Sample C Male 4.2
Sample D Male 2.8
Ventral hippocampus
nTPM: 4.1
Samples: 4

Max nTPM: 6.5
Min nTPM: 2.6
Sample A Female 3.6
Sample B Female 3.6
Sample C Male 6.5
Sample D Male 2.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 2.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1.3
Samples: 4

Max nTPM: 1.4
Min nTPM: 1.2
Sample A Male 1.3
Sample B Male 1.2
Sample C Female 1.4
Sample D Female 1.4
Hippocampal formation
nTPM: 2.0
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.3
Sample A Male 1.3
Sample B Male 1.8
Sample C Female 2.4
Sample D Female 2.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.9
69529125 Antisense, RP_050421_03_E12, Mouse strain C57BL/6J (56 days, male) 1.9

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