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  • SH3GLB2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:106.1 nTPM
HPA Brain:69.2 nTPM
GTEx:106.1 nTPM
FANTOM5:49.3 Scaled Tags Per Million
Pig:80.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 65.4
2194 Female, age 79, both hemispheres 80.7
2816 Male, age 47, midline 75.1
2565 Male, age 75, midline 66.2
1981 Female, age 72, midline 58.3
2048 Male, age 55, midline 46.7
Cervical spinal cord, dorsal horn
nTPM: 64.0
2296 Male, age 66, both hemispheres 85.0
2173 Female, age 72, unknown 65.0
2297 Male, age 75, both hemispheres 62.7
1877 Male, age 55, unknown 60.4
2069 Male, age 47, both hemispheres 56.6
2721 Male, age 90, both hemispheres 54.6
Cervical spinal cord, ventral horn
nTPM: 69.2
2820 Female, age 79, both hemispheres 90.4
2068 Male, age 55, unknown 76.1
2480 Male, age 75, both hemispheres 71.4
2295 Male, age 66, both hemispheres 69.3
2098 Female, age 72, unknown 55.3
2809 Male, age 90, both hemispheres 53.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 106.1
Samples: 204

Max nTPM: 208.3
Min nTPM: 38.0
Std nTPM: 29.3
Median nTPM: 104.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 208.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 184.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 179.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 175.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 174.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 172.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 167.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 162.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 162.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 162.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 160.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 160.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 159.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 158.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 154.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 153.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 152.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 151.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 151.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 151.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 148.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 147.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 146.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 146.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 146.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 142.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 138.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 138.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 136.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 135.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 135.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 134.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 133.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 131.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 130.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 130.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 129.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 129.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 128.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 128.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 127.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 127.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 127.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 126.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 125.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 124.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 124.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 123.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 121.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 121.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 120.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 120.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 120.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 120.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 119.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 119.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 118.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 118.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 118.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 118.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 117.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 117.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 116.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 116.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 116.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 115.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 115.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 115.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 115.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 114.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 114.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 114.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 113.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 113.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 112.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 112.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 112.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 112.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 112.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 111.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 110.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 109.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 109.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 109.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 109.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 109.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 109.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 109.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 108.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 108.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 108.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 107.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 107.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 107.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 107.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 107.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 107.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 106.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 106.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 105.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 105.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 104.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 104.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 104.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 104.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 104.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 104.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 103.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 103.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 103.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 103.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 102.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 102.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 101.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 101.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 100.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 100.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 99.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 98.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 97.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 97.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 97.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 97.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 96.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 96.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 96.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 96.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 95.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 95.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 94.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 94.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 93.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 93.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 92.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 91.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 91.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 91.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 91.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 91.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 90.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 90.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 90.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 90.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 88.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 87.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 87.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 86.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 86.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 86.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 86.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 85.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 85.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 84.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 84.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 84.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 84.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 83.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 83.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 82.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 82.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 81.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 81.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 81.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 81.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 80.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 80.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 80.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 79.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 79.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 78.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 78.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 77.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 77.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 77.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 76.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 75.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 75.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 74.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 73.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 73.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 72.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 71.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 71.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 70.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 69.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 69.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 68.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 67.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 66.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 66.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 65.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 63.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 63.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 63.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 63.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 61.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 58.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 57.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 56.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 56.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 52.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 50.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 49.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 38.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

49.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 49.3
FF:10181-103D1 60 years, female 55.4
FF:10159-103A6 76 years, female 43.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 67.9
Samples: 4

Max nTPM: 73.6
Min nTPM: 61.6
Sample A Female 71.6
Sample B Female 64.6
Sample C Male 61.6
Sample D Male 73.6
Ventral spinal cord
nTPM: 80.7
Samples: 4

Max nTPM: 89.2
Min nTPM: 74.4
Sample A Female 75.4
Sample B Female 89.2
Sample C Male 74.4
Sample D Male 83.9

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