MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.7 nTPM
HPA Brain:224.3 nTPM
GTEx:54.7 nTPM
FANTOM5:47.8 Scaled Tags Per Million
Pig:84.3 nTPM
Mouse:69.9 nTPM
Allen mouse:3.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 224.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 199.2
2586 Male, age 75, left hemisphere 289.8
2019 Male, age 18, unknown 242.5
2828 Female, age 72, unknown 219.0
2666 Male, age 74, left hemisphere 202.0
1870 Female, age 42, unknown 185.5
1830 Male, age 51, unknown 184.1
1833 Male, age 53, unknown 178.1
2411 Female, age 72, unknown 177.0
1827 Male, age 72, unknown 166.2
2219 Male, age 76, both hemispheres 147.4
Dorsal raphe nucleus
nTPM: 171.4
1828 Male, age 53, unknown 201.5
2750 Male, age 76, both hemispheres 179.0
2016 Female, age 72, unknown 176.5
2047 Male, age 72, unknown 173.5
2298 Female, age 72, unknown 126.4
Inferior colliculus
nTPM: 173.3
1848 Female, age 42, unknown 194.2
1890 Male, age 53, unknown 182.2
2849 Male, age 72, unknown 161.0
2097 Female, age 72, unknown 155.8
Median raphe nucleus
nTPM: 118.7
2220 Male, age 76, midline 118.7
Periaquaductal grey, anterior
nTPM: 149.8
1947 Male, age 18, unknown 154.3
1795 Male, age 51, unknown 152.8
2502 Female, age 75, unknown 142.3
Periaquaductal grey, dorsal
nTPM: 125.3
2464 Female, age 72, unknown 157.4
1831 Male, age 72, unknown 119.7
1840 Male, age 53, unknown 118.9
2850 Male, age 76, both hemispheres 105.2
Periaquaductal grey, lateral
nTPM: 117.3
2053 Male, age 18, unknown 123.6
2272 Male, age 74, both hemispheres 118.0
2140 Male, age 76, both hemispheres 110.4
Pretectal area
nTPM: 156.8
2007 Male, age 72, unknown 209.6
1817 Female, age 42, unknown 205.3
1944 Female, age 72, unknown 173.7
1815 Male, age 53, unknown 171.4
1816 Male, age 51, unknown 164.0
2667 Female, age 75, unknown 151.2
2316 Male, age 76, right hemisphere 147.9
2825 Male, age 18, unknown 138.9
2273 Male, age 74, both hemispheres 123.2
2407 Male, age 75, both hemispheres 121.3
2224 Female, age 72, unknown 118.3
Red nucleus
nTPM: 224.3
2588 Male, age 74, left hemisphere 248.7
2769 Male, age 72, unknown 248.3
1821 Female, age 72, unknown 243.6
2227 Male, age 72, unknown 241.7
2823 Male, age 76, right hemisphere 238.8
2503 Female, age 72, unknown 236.4
2785 Male, age 18, unknown 235.2
1954 Female, age 42, unknown 234.1
1904 Male, age 53, unknown 209.8
1865 Male, age 51, unknown 208.9
2725 Female, age 75, unknown 175.7
2584 Male, age 75, left hemisphere 170.0
Substantia nigra
nTPM: 173.2
1916 Female, age 42, unknown 200.6
1941 Male, age 53, unknown 190.2
2583 Male, age 75, right hemisphere 186.9
1889 Female, age 72, unknown 186.3
2665 Male, age 74, both hemispheres 181.1
1851 Male, age 51, unknown 179.5
2699 Male, age 18, unknown 163.5
2590 Female, age 75, unknown 156.1
2409 Female, age 72, unknown 149.7
2241 Male, age 72, unknown 137.7
Superior colliculus
nTPM: 171.6
2668 Female, age 75, unknown 253.4
2664 Male, age 75, both hemispheres 181.1
1895 Male, age 76, right hemisphere 176.8
1839 Male, age 51, unknown 175.4
1913 Female, age 42, unknown 163.9
1995 Male, age 72, unknown 163.7
2587 Male, age 74, left hemisphere 160.5
2087 Female, age 72, unknown 155.8
1796 Male, age 53, unknown 146.4
2261 Male, age 18, unknown 138.8
Ventral tegmental area
nTPM: 163.8
2410 Female, age 72, unknown 188.0
2223 Female, age 72, unknown 184.1
1915 Female, age 42, unknown 159.0
1942 Male, age 51, unknown 157.2
2021 Male, age 53, unknown 148.2
2218 Male, age 76, both hemispheres 146.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 54.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.7
Samples: 183

Max nTPM: 107.3
Min nTPM: 16.0
Std nTPM: 13.6
Median nTPM: 53.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 107.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 88.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 85.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 84.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 83.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 83.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 83.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 80.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 80.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 79.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 79.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.8
FF:10158-103A5 76 years, female 47.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 84.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.0
Samples: 4

Max nTPM: 89.8
Min nTPM: 61.4
Sample A Female 89.8
Sample B Female 64.8
Sample C Male 61.4
Sample D Male 80.0
Midbrain
nTPM: 84.4
Samples: 4

Max nTPM: 130.5
Min nTPM: 60.9
Sample A Female 130.5
Sample B Female 66.7
Sample C Male 79.3
Sample D Male 60.9
Periaqueductal gray
nTPM: 61.9
Samples: 3

Max nTPM: 71.2
Min nTPM: 54.0
Sample B Female 71.2
Sample C Male 60.6
Sample D Male 54.0
Superior colliculi
nTPM: 70.9
Samples: 4

Max nTPM: 83.6
Min nTPM: 48.0
Sample A Female 83.6
Sample B Female 48.0
Sample C Male 73.9
Sample D Male 78.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 69.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.9
Samples: 4

Max nTPM: 72.0
Min nTPM: 68.5
Sample A Male 70.1
Sample B Male 69.1
Sample C Female 72.0
Sample D Female 68.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
70743871 Antisense, RP_050725_01_G11, Mouse strain C57BL/6J (56 days, male) 4.7
671260 Antisense, RP_040914_02_C11, Mouse strain C57BL/6J (56 days, male) 4.0
77910763 Antisense, RP_070208_04_G01, Mouse strain C57BL/6J (56 days, male) 2.8

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