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  • GLUD1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:123.9 nTPM
HPA Brain:243.7 nTPM
GTEx:123.9 nTPM
FANTOM5:161.0 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.7
Sample id Sample description nTPM
Amygdala
nTPM: 243.7
2514 Male, age 75, right hemisphere 301.2
2695 Female, age 67, right hemisphere 264.4
1987 Female, age 91, left hemisphere 231.6
2814 Male, age 76, right hemisphere 211.6
2517 Female, age 94, left hemisphere 209.8
Basal amygdala
nTPM: 194.4
2609 Male, age 75, right hemisphere 307.6
2243 Female, age 91, right hemisphere 218.2
1955 Male, age 76, both hemispheres 204.3
2110 Male, age 80, left hemisphere 185.8
2685 Female, age 94, left hemisphere 145.0
2827 Female, age 67, right hemisphere 105.3
Central amygdala
nTPM: 204.7
2515 Male, age 75, right hemisphere 237.8
1905 Male, age 76, both hemispheres 222.1
2239 Male, age 80, left hemisphere 216.3
2826 Female, age 94, left hemisphere 175.6
2701 Female, age 91, right hemisphere 171.7
Corticomedial amygdala
nTPM: 207.6
2428 Male, age 75, right hemisphere 273.6
2829 Male, age 80, left hemisphere 248.8
2242 Female, age 91, right hemisphere 229.7
2429 Female, age 94, left hemisphere 199.0
2240 Male, age 76, both hemispheres 172.2
2535 Female, age 67, right hemisphere 122.2
Lateral amygdala
nTPM: 192.3
2516 Male, age 75, right hemisphere 298.9
1883 Male, age 76, both hemispheres 203.3
2256 Male, age 80, left hemisphere 184.6
2534 Female, age 94, left hemisphere 172.8
2255 Female, age 91, right hemisphere 170.5
2830 Female, age 67, right hemisphere 123.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 123.9
Samples: 181

Max nTPM: 324.2
Min nTPM: 23.7
Std nTPM: 59.7
Median nTPM: 113.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 324.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 319.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 299.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 289.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 255.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 255.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 247.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 241.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 240.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 239.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 231.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 227.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 224.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 224.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 218.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 216.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 213.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 208.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 201.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 197.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 196.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 196.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 193.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 193.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 191.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 189.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 189.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 189.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 188.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 184.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 182.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 182.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 182.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 180.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 179.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 179.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 177.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 169.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 168.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 164.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 161.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 158.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 157.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 157.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 155.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 155.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 154.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 152.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 152.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 151.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 149.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 149.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 147.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 146.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 146.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 145.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 145.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 143.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 141.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 140.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 140.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 140.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 140.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 139.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 138.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 136.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 135.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 135.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 134.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 133.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 132.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 131.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 129.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 126.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 124.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 123.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 122.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 121.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 121.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 120.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 120.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 119.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 118.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 117.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 117.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 115.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 114.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 114.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 114.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 113.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 113.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 112.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 112.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 112.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 112.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 111.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 111.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 110.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 110.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 107.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 107.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 107.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 105.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 103.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 103.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 103.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 103.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 102.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 102.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 101.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 100.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 100.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 96.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 96.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 94.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 94.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 93.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 93.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 92.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 91.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 90.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 89.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 87.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 87.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 85.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 84.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 82.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 80.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 79.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 79.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 78.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 78.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 77.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 76.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 76.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 76.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 75.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 75.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 75.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 74.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 74.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 74.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 74.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 73.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 72.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 72.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 71.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 71.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 70.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 70.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 68.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 66.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 66.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 65.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 63.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 62.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 61.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 60.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 59.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 59.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 59.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 58.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 57.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 56.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 56.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 56.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 55.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 55.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 52.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 49.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 48.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 48.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 47.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 47.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 45.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 42.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 35.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 31.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 30.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 28.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 23.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

161.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 161.0
FF:10151-102I7 76 years, female 161.0

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