MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.0 nTPM
HPA Brain:117.0 nTPM
GTEx:63.0 nTPM
FANTOM5:4.0 Scaled Tags Per Million
Pig:202.8 nTPM
Mouse:124.5 nTPM
Allen mouse:20.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 117.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.2
2019 Male, age 18, unknown 126.4
2219 Male, age 76, both hemispheres 105.5
2411 Female, age 72, unknown 105.5
1827 Male, age 72, unknown 74.5
1833 Male, age 53, unknown 71.0
1870 Female, age 42, unknown 66.8
2666 Male, age 74, left hemisphere 65.8
1830 Male, age 51, unknown 63.6
2586 Male, age 75, left hemisphere 59.0
2828 Female, age 72, unknown 54.0
Dorsal raphe nucleus
nTPM: 84.5
2298 Female, age 72, unknown 119.6
2750 Male, age 76, both hemispheres 91.6
2047 Male, age 72, unknown 81.1
1828 Male, age 53, unknown 76.5
2016 Female, age 72, unknown 53.5
Inferior colliculus
nTPM: 86.9
2097 Female, age 72, unknown 111.3
1890 Male, age 53, unknown 88.6
1848 Female, age 42, unknown 85.8
2849 Male, age 72, unknown 61.7
Median raphe nucleus
nTPM: 117.0
2220 Male, age 76, midline 117.0
Periaquaductal grey, anterior
nTPM: 75.1
2502 Female, age 75, unknown 89.2
1795 Male, age 51, unknown 72.7
1947 Male, age 18, unknown 63.4
Periaquaductal grey, dorsal
nTPM: 60.8
1831 Male, age 72, unknown 71.2
2464 Female, age 72, unknown 58.0
2850 Male, age 76, both hemispheres 57.5
1840 Male, age 53, unknown 56.3
Periaquaductal grey, lateral
nTPM: 52.4
2272 Male, age 74, both hemispheres 61.4
2053 Male, age 18, unknown 48.4
2140 Male, age 76, both hemispheres 47.4
Pretectal area
nTPM: 100.7
1944 Female, age 72, unknown 166.3
2007 Male, age 72, unknown 153.7
1817 Female, age 42, unknown 152.8
1816 Male, age 51, unknown 128.5
2667 Female, age 75, unknown 123.1
1815 Male, age 53, unknown 100.0
2224 Female, age 72, unknown 89.1
2825 Male, age 18, unknown 56.0
2316 Male, age 76, right hemisphere 49.4
2407 Male, age 75, both hemispheres 48.5
2273 Male, age 74, both hemispheres 39.7
Red nucleus
nTPM: 68.5
2785 Male, age 18, unknown 112.8
1821 Female, age 72, unknown 95.9
1954 Female, age 42, unknown 77.4
2584 Male, age 75, left hemisphere 77.2
2823 Male, age 76, right hemisphere 70.2
2227 Male, age 72, unknown 66.0
2769 Male, age 72, unknown 65.5
1865 Male, age 51, unknown 61.5
2503 Female, age 72, unknown 58.9
1904 Male, age 53, unknown 57.1
2588 Male, age 74, left hemisphere 46.8
2725 Female, age 75, unknown 32.3
Substantia nigra
nTPM: 100.6
1941 Male, age 53, unknown 171.9
1916 Female, age 42, unknown 146.2
1889 Female, age 72, unknown 140.1
2665 Male, age 74, both hemispheres 103.6
1851 Male, age 51, unknown 99.6
2241 Male, age 72, unknown 98.6
2409 Female, age 72, unknown 85.5
2699 Male, age 18, unknown 65.9
2583 Male, age 75, right hemisphere 48.5
2590 Female, age 75, unknown 46.2
Superior colliculus
nTPM: 80.3
2668 Female, age 75, unknown 176.7
2087 Female, age 72, unknown 121.6
1895 Male, age 76, right hemisphere 99.5
2261 Male, age 18, unknown 71.9
1839 Male, age 51, unknown 68.8
1796 Male, age 53, unknown 68.3
1913 Female, age 42, unknown 56.5
2664 Male, age 75, both hemispheres 48.6
1995 Male, age 72, unknown 47.3
2587 Male, age 74, left hemisphere 43.5
Ventral tegmental area
nTPM: 90.3
2218 Male, age 76, both hemispheres 131.7
2410 Female, age 72, unknown 111.5
1915 Female, age 42, unknown 103.7
1942 Male, age 51, unknown 76.8
2021 Male, age 53, unknown 59.7
2223 Female, age 72, unknown 58.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 63.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.0
Samples: 183

Max nTPM: 536.8
Min nTPM: 0.4
Std nTPM: 74.2
Median nTPM: 34.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 536.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 411.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 299.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 249.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 235.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 221.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 208.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 201.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 196.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 191.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 187.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 4.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.0
FF:10158-103A5 76 years, female 4.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 202.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 157.5
Samples: 4

Max nTPM: 236.5
Min nTPM: 57.6
Sample A Female 236.5
Sample B Female 104.5
Sample C Male 231.3
Sample D Male 57.6
Midbrain
nTPM: 148.2
Samples: 4

Max nTPM: 240.0
Min nTPM: 28.9
Sample A Female 28.9
Sample B Female 117.8
Sample C Male 240.0
Sample D Male 206.1
Periaqueductal gray
nTPM: 110.3
Samples: 3

Max nTPM: 135.7
Min nTPM: 89.5
Sample B Female 105.8
Sample C Male 135.7
Sample D Male 89.5
Superior colliculi
nTPM: 202.8
Samples: 4

Max nTPM: 295.4
Min nTPM: 80.4
Sample A Female 230.1
Sample B Female 80.4
Sample C Male 295.4
Sample D Male 205.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 124.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 124.6
Samples: 4

Max nTPM: 134.5
Min nTPM: 114.4
Sample A Male 114.4
Sample B Male 125.2
Sample C Female 134.5
Sample D Female 124.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 20.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.2
71836833 Antisense, RP_051017_02_B08, Mouse strain C57BL/6J (56 days, male) 21.2
67765717 Antisense, RP_040916_01_E12, Mouse strain C57BL/6J (56 days, male) 19.3

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