MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.1 nTPM
HPA Brain:15.7 nTPM
GTEx:10.1 nTPM
FANTOM5:8.5 Scaled Tags Per Million
Pig:4.6 nTPM
Mouse:11.8 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 15.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.1
2586 Male, age 75, left hemisphere 13.5
1827 Male, age 72, unknown 12.9
1833 Male, age 53, unknown 11.2
2666 Male, age 74, left hemisphere 11.2
2828 Female, age 72, unknown 11.2
2219 Male, age 76, both hemispheres 10.9
2019 Male, age 18, unknown 10.3
1830 Male, age 51, unknown 10.2
1870 Female, age 42, unknown 9.9
2411 Female, age 72, unknown 9.3
Dorsal raphe nucleus
nTPM: 13.7
2298 Female, age 72, unknown 15.9
2016 Female, age 72, unknown 15.5
2047 Male, age 72, unknown 13.6
1828 Male, age 53, unknown 12.8
2750 Male, age 76, both hemispheres 10.6
Inferior colliculus
nTPM: 11.7
2849 Male, age 72, unknown 12.6
1848 Female, age 42, unknown 11.6
2097 Female, age 72, unknown 11.5
1890 Male, age 53, unknown 11.1
Median raphe nucleus
nTPM: 12.6
2220 Male, age 76, midline 12.6
Periaquaductal grey, anterior
nTPM: 12.2
1795 Male, age 51, unknown 13.5
1947 Male, age 18, unknown 12.2
2502 Female, age 75, unknown 11.0
Periaquaductal grey, dorsal
nTPM: 14.9
2850 Male, age 76, both hemispheres 18.3
1840 Male, age 53, unknown 16.5
1831 Male, age 72, unknown 12.6
2464 Female, age 72, unknown 12.0
Periaquaductal grey, lateral
nTPM: 15.7
2140 Male, age 76, both hemispheres 17.6
2272 Male, age 74, both hemispheres 17.3
2053 Male, age 18, unknown 12.3
Pretectal area
nTPM: 12.5
2273 Male, age 74, both hemispheres 17.3
2667 Female, age 75, unknown 14.7
2825 Male, age 18, unknown 13.7
2407 Male, age 75, both hemispheres 13.3
2224 Female, age 72, unknown 12.9
1816 Male, age 51, unknown 12.8
1944 Female, age 72, unknown 11.0
2007 Male, age 72, unknown 11.0
1817 Female, age 42, unknown 10.7
1815 Male, age 53, unknown 10.4
2316 Male, age 76, right hemisphere 9.9
Red nucleus
nTPM: 11.0
2584 Male, age 75, left hemisphere 12.2
2769 Male, age 72, unknown 12.0
2503 Female, age 72, unknown 11.6
2588 Male, age 74, left hemisphere 11.3
1954 Female, age 42, unknown 11.1
1865 Male, age 51, unknown 10.9
1904 Male, age 53, unknown 10.9
2725 Female, age 75, unknown 10.9
2785 Male, age 18, unknown 10.7
1821 Female, age 72, unknown 10.3
2227 Male, age 72, unknown 10.3
2823 Male, age 76, right hemisphere 10.0
Substantia nigra
nTPM: 12.9
2699 Male, age 18, unknown 15.1
1916 Female, age 42, unknown 14.2
1941 Male, age 53, unknown 14.1
2665 Male, age 74, both hemispheres 14.0
2590 Female, age 75, unknown 12.8
1851 Male, age 51, unknown 12.7
2583 Male, age 75, right hemisphere 12.7
2241 Male, age 72, unknown 12.6
2409 Female, age 72, unknown 10.6
1889 Female, age 72, unknown 10.2
Superior colliculus
nTPM: 11.9
2664 Male, age 75, both hemispheres 15.1
2261 Male, age 18, unknown 12.5
1796 Male, age 53, unknown 12.4
2587 Male, age 74, left hemisphere 12.2
1995 Male, age 72, unknown 12.0
1839 Male, age 51, unknown 11.9
1895 Male, age 76, right hemisphere 11.8
2668 Female, age 75, unknown 11.1
2087 Female, age 72, unknown 10.9
1913 Female, age 42, unknown 9.6
Ventral tegmental area
nTPM: 11.1
2223 Female, age 72, unknown 11.8
1915 Female, age 42, unknown 11.7
2021 Male, age 53, unknown 11.2
2218 Male, age 76, both hemispheres 10.9
1942 Male, age 51, unknown 10.6
2410 Female, age 72, unknown 10.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.1
Samples: 183

Max nTPM: 19.9
Min nTPM: 4.3
Std nTPM: 2.4
Median nTPM: 9.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 19.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 19.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 17.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 16.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 15.9
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 15.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 14.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 14.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 14.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 14.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 14.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.5
FF:10158-103A5 76 years, female 8.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 4.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.8
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.6
Sample A Female 0.9
Sample B Female 0.9
Sample C Male 0.9
Sample D Male 0.6
Midbrain
nTPM: 1.1
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.8
Sample A Female 0.8
Sample B Female 1.4
Sample C Male 0.9
Sample D Male 1.1
Periaqueductal gray
nTPM: 4.7
Samples: 3

Max nTPM: 5.7
Min nTPM: 3.2
Sample B Female 3.2
Sample C Male 5.7
Sample D Male 5.1
Superior colliculi
nTPM: 0.8
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.7
Sample A Female 0.7
Sample B Female 1.0
Sample C Male 0.8
Sample D Male 0.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.8
Samples: 4

Max nTPM: 12.0
Min nTPM: 11.5
Sample A Male 12.0
Sample B Male 11.5
Sample C Female 11.5
Sample D Female 12.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69114968 Antisense, RP_050317_02_D07, Mouse strain C57BL/6J (56 days, male) 0.3

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