We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GSTO1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • GSTO1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:109.5 nTPM
HPA Brain:69.0 nTPM
GTEx:109.5 nTPM
FANTOM5:56.6 Scaled Tags Per Million
Pig:26.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 64.3
1981 Female, age 72, midline 84.1
2194 Female, age 79, both hemispheres 68.1
2048 Male, age 55, midline 62.3
2565 Male, age 75, midline 54.5
2816 Male, age 47, midline 52.6
Cervical spinal cord, dorsal horn
nTPM: 69.0
2173 Female, age 72, unknown 92.6
2069 Male, age 47, both hemispheres 78.0
2296 Male, age 66, both hemispheres 77.9
2297 Male, age 75, both hemispheres 65.5
1877 Male, age 55, unknown 52.6
2721 Male, age 90, both hemispheres 47.3
Cervical spinal cord, ventral horn
nTPM: 68.3
2098 Female, age 72, unknown 80.8
2809 Male, age 90, both hemispheres 80.6
2068 Male, age 55, unknown 73.9
2480 Male, age 75, both hemispheres 71.8
2295 Male, age 66, both hemispheres 55.1
2820 Female, age 79, both hemispheres 47.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 109.5
Samples: 204

Max nTPM: 293.2
Min nTPM: 65.8
Std nTPM: 30.1
Median nTPM: 105.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 293.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 277.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 200.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 189.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 175.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 170.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 167.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 161.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 160.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 157.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 157.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 151.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 151.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 151.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 149.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 146.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 144.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 144.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 143.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 142.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 139.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 139.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 139.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 139.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 138.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 138.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 138.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 138.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 137.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 135.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 135.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 135.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 134.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 133.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 131.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 129.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 129.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 129.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 128.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 128.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 128.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 127.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 126.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 126.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 126.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 125.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 125.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 123.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 123.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 122.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 121.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 121.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 121.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 120.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 120.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 120.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 120.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 119.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 119.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 119.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 118.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 117.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 117.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 117.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 116.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 115.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 115.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 115.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 115.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 115.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 114.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 114.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 114.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 114.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 113.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 113.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 112.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 112.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 112.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 112.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 111.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 111.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 110.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 110.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 110.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 110.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 109.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 109.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 109.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 109.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 108.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 108.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 108.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 107.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 107.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 107.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 107.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 107.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 106.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 106.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 106.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 105.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 105.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 105.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 104.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 104.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 104.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 104.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 103.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 103.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 103.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 102.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 102.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 102.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 102.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 100.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 100.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 100.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 100.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 99.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 99.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 98.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 98.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 98.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 97.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 97.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 97.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 97.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 97.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 96.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 96.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 96.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 96.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 95.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 95.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 95.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 95.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 94.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 94.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 94.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 94.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 94.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 93.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 93.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 93.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 92.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 91.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 91.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 91.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 91.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 91.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 91.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 90.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 90.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 90.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 90.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 89.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 89.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 88.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 88.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 88.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 88.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 87.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 87.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 86.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 86.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 86.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 86.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 85.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 84.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 84.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 83.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 83.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 83.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 83.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 82.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 82.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 82.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 80.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 80.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 78.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 78.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 78.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 77.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 77.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 77.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 75.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 75.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 74.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 74.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 74.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 73.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 71.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 71.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 70.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 70.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 69.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 69.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 69.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 69.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 68.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 68.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 68.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 65.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

56.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 56.6
FF:10181-103D1 60 years, female 77.6
FF:10159-103A6 76 years, female 35.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1.0
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.6
Sample A Female 1.3
Sample B Female 1.0
Sample C Male 1.0
Sample D Male 0.6
Ventral spinal cord
nTPM: 1.3
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.7
Sample A Female 1.4
Sample B Female 1.1
Sample C Male 1.8
Sample D Male 0.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo