MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.8 nTPM
HPA Brain:30.6 nTPM
GTEx:34.8 nTPM
FANTOM5:45.2 Scaled Tags Per Million
Pig:4.2 nTPM
Mouse:2.1 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.1
2586 Male, age 75, left hemisphere 25.8
2019 Male, age 18, unknown 25.5
2828 Female, age 72, unknown 22.9
1827 Male, age 72, unknown 19.7
1833 Male, age 53, unknown 18.1
2411 Female, age 72, unknown 16.0
2666 Male, age 74, left hemisphere 16.0
1870 Female, age 42, unknown 15.9
1830 Male, age 51, unknown 13.9
2219 Male, age 76, both hemispheres 7.1
Dorsal raphe nucleus
nTPM: 17.4
2016 Female, age 72, unknown 25.0
1828 Male, age 53, unknown 20.1
2298 Female, age 72, unknown 17.4
2750 Male, age 76, both hemispheres 13.3
2047 Male, age 72, unknown 11.2
Inferior colliculus
nTPM: 15.8
2097 Female, age 72, unknown 21.0
1890 Male, age 53, unknown 20.8
1848 Female, age 42, unknown 11.1
2849 Male, age 72, unknown 10.3
Median raphe nucleus
nTPM: 26.6
2220 Male, age 76, midline 26.6
Periaquaductal grey, anterior
nTPM: 19.4
1947 Male, age 18, unknown 22.7
1795 Male, age 51, unknown 20.4
2502 Female, age 75, unknown 15.2
Periaquaductal grey, dorsal
nTPM: 17.0
1831 Male, age 72, unknown 21.7
2850 Male, age 76, both hemispheres 20.6
2464 Female, age 72, unknown 14.3
1840 Male, age 53, unknown 11.2
Periaquaductal grey, lateral
nTPM: 18.0
2272 Male, age 74, both hemispheres 22.4
2140 Male, age 76, both hemispheres 19.6
2053 Male, age 18, unknown 12.1
Pretectal area
nTPM: 17.8
2007 Male, age 72, unknown 25.8
1817 Female, age 42, unknown 25.0
1816 Male, age 51, unknown 22.3
1815 Male, age 53, unknown 21.2
2667 Female, age 75, unknown 21.2
2273 Male, age 74, both hemispheres 17.7
2316 Male, age 76, right hemisphere 15.6
1944 Female, age 72, unknown 15.5
2224 Female, age 72, unknown 14.0
2407 Male, age 75, both hemispheres 9.3
2825 Male, age 18, unknown 8.0
Red nucleus
nTPM: 21.6
1821 Female, age 72, unknown 28.3
1865 Male, age 51, unknown 26.2
2588 Male, age 74, left hemisphere 25.9
2769 Male, age 72, unknown 24.8
2227 Male, age 72, unknown 22.7
2785 Male, age 18, unknown 22.3
1904 Male, age 53, unknown 21.3
2725 Female, age 75, unknown 20.7
2823 Male, age 76, right hemisphere 19.1
2503 Female, age 72, unknown 17.9
1954 Female, age 42, unknown 16.2
2584 Male, age 75, left hemisphere 14.4
Substantia nigra
nTPM: 30.6
1916 Female, age 42, unknown 77.5
2409 Female, age 72, unknown 40.8
1851 Male, age 51, unknown 36.0
2699 Male, age 18, unknown 30.7
1889 Female, age 72, unknown 26.8
2590 Female, age 75, unknown 22.5
2241 Male, age 72, unknown 19.3
2665 Male, age 74, both hemispheres 17.8
2583 Male, age 75, right hemisphere 17.6
1941 Male, age 53, unknown 16.7
Superior colliculus
nTPM: 15.0
1796 Male, age 53, unknown 20.9
2087 Female, age 72, unknown 20.2
2261 Male, age 18, unknown 20.2
1913 Female, age 42, unknown 18.0
2668 Female, age 75, unknown 17.7
1995 Male, age 72, unknown 15.0
2587 Male, age 74, left hemisphere 12.5
1895 Male, age 76, right hemisphere 9.6
2664 Male, age 75, both hemispheres 8.6
1839 Male, age 51, unknown 7.5
Ventral tegmental area
nTPM: 24.3
1915 Female, age 42, unknown 40.3
2410 Female, age 72, unknown 34.2
1942 Male, age 51, unknown 22.0
2021 Male, age 53, unknown 16.6
2218 Male, age 76, both hemispheres 16.5
2223 Female, age 72, unknown 16.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.8
Samples: 183

Max nTPM: 301.4
Min nTPM: 1.3
Std nTPM: 32.7
Median nTPM: 27.8
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 301.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 259.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 124.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 98.7
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 89.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 79.4
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 77.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 75.7
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 73.1
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 69.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 69.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 45.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.2
FF:10158-103A5 76 years, female 45.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 4.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.5
Samples: 4

Max nTPM: 3.4
Min nTPM: 1.5
Sample A Female 2.5
Sample B Female 3.4
Sample C Male 2.5
Sample D Male 1.5
Midbrain
nTPM: 1.1
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.8
Sample A Female 0.9
Sample B Female 0.8
Sample C Male 1.9
Sample D Male 0.8
Periaqueductal gray
nTPM: 0.5
Samples: 3

Max nTPM: 0.8
Min nTPM: 0.3
Sample B Female 0.4
Sample C Male 0.8
Sample D Male 0.3
Superior colliculi
nTPM: 4.3
Samples: 4

Max nTPM: 11.4
Min nTPM: 1.1
Sample A Female 2.8
Sample B Female 11.4
Sample C Male 1.7
Sample D Male 1.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.1
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.9
Sample A Male 2.0
Sample B Male 2.2
Sample C Female 1.9
Sample D Female 2.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68667655 Antisense, RP_050201_02_F06, Mouse strain C57BL/6J (56 days, male) 0.1
74819251 Antisense, RP_060315_02_D03, Mouse strain C57BL/6J (56 days, male) 0.1

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