MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.4 nTPM
HPA Brain:95.4 nTPM
GTEx:53.4 nTPM
FANTOM5:129.8 Scaled Tags Per Million
Pig:116.4 nTPM
Mouse:117.0 nTPM
Allen mouse:3.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 95.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.6
2411 Female, age 72, unknown 98.6
1833 Male, age 53, unknown 91.3
1870 Female, age 42, unknown 86.9
2019 Male, age 18, unknown 86.4
1830 Male, age 51, unknown 86.3
2219 Male, age 76, both hemispheres 74.5
2828 Female, age 72, unknown 70.4
2586 Male, age 75, left hemisphere 69.7
1827 Male, age 72, unknown 66.9
2666 Male, age 74, left hemisphere 54.6
Dorsal raphe nucleus
nTPM: 94.1
2298 Female, age 72, unknown 99.9
1828 Male, age 53, unknown 97.5
2750 Male, age 76, both hemispheres 96.7
2047 Male, age 72, unknown 89.9
2016 Female, age 72, unknown 86.6
Inferior colliculus
nTPM: 81.8
2097 Female, age 72, unknown 89.0
1848 Female, age 42, unknown 82.3
1890 Male, age 53, unknown 81.1
2849 Male, age 72, unknown 74.7
Median raphe nucleus
nTPM: 95.4
2220 Male, age 76, midline 95.4
Periaquaductal grey, anterior
nTPM: 76.1
2502 Female, age 75, unknown 85.8
1947 Male, age 18, unknown 75.7
1795 Male, age 51, unknown 66.7
Periaquaductal grey, dorsal
nTPM: 78.9
2850 Male, age 76, both hemispheres 96.5
2464 Female, age 72, unknown 80.9
1840 Male, age 53, unknown 72.5
1831 Male, age 72, unknown 65.9
Periaquaductal grey, lateral
nTPM: 75.3
2272 Male, age 74, both hemispheres 78.0
2053 Male, age 18, unknown 76.0
2140 Male, age 76, both hemispheres 71.8
Pretectal area
nTPM: 77.1
2273 Male, age 74, both hemispheres 89.0
1817 Female, age 42, unknown 85.5
2224 Female, age 72, unknown 84.8
2667 Female, age 75, unknown 84.5
1815 Male, age 53, unknown 80.2
1944 Female, age 72, unknown 76.6
2007 Male, age 72, unknown 76.6
2825 Male, age 18, unknown 74.6
1816 Male, age 51, unknown 69.9
2316 Male, age 76, right hemisphere 67.7
2407 Male, age 75, both hemispheres 58.5
Red nucleus
nTPM: 86.0
1821 Female, age 72, unknown 114.9
1904 Male, age 53, unknown 100.0
1865 Male, age 51, unknown 97.9
1954 Female, age 42, unknown 96.3
2227 Male, age 72, unknown 93.9
2769 Male, age 72, unknown 90.3
2823 Male, age 76, right hemisphere 82.8
2503 Female, age 72, unknown 82.2
2785 Male, age 18, unknown 81.2
2725 Female, age 75, unknown 72.6
2588 Male, age 74, left hemisphere 63.2
2584 Male, age 75, left hemisphere 57.0
Substantia nigra
nTPM: 92.1
1916 Female, age 42, unknown 132.7
2241 Male, age 72, unknown 109.9
2699 Male, age 18, unknown 96.2
1851 Male, age 51, unknown 93.9
1941 Male, age 53, unknown 93.4
1889 Female, age 72, unknown 91.4
2665 Male, age 74, both hemispheres 80.1
2409 Female, age 72, unknown 77.5
2590 Female, age 75, unknown 74.4
2583 Male, age 75, right hemisphere 71.3
Superior colliculus
nTPM: 73.2
2668 Female, age 75, unknown 82.6
2587 Male, age 74, left hemisphere 80.3
1995 Male, age 72, unknown 79.3
1913 Female, age 42, unknown 78.4
1839 Male, age 51, unknown 77.1
1895 Male, age 76, right hemisphere 73.1
2087 Female, age 72, unknown 73.0
2261 Male, age 18, unknown 65.0
1796 Male, age 53, unknown 62.1
2664 Male, age 75, both hemispheres 61.6
Ventral tegmental area
nTPM: 89.8
2410 Female, age 72, unknown 105.8
2223 Female, age 72, unknown 99.2
2218 Male, age 76, both hemispheres 93.5
1915 Female, age 42, unknown 89.6
1942 Male, age 51, unknown 78.1
2021 Male, age 53, unknown 72.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 53.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.4
Samples: 183

Max nTPM: 117.3
Min nTPM: 18.7
Std nTPM: 16.2
Median nTPM: 51.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 117.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 98.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 97.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 94.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 91.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 89.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 88.0
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 86.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 86.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 85.3
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 82.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 129.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 129.8
FF:10158-103A5 76 years, female 129.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 116.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 111.0
Samples: 4

Max nTPM: 129.9
Min nTPM: 88.4
Sample A Female 129.9
Sample B Female 88.4
Sample C Male 106.4
Sample D Male 119.2
Midbrain
nTPM: 116.4
Samples: 4

Max nTPM: 170.2
Min nTPM: 88.4
Sample A Female 170.2
Sample B Female 112.8
Sample C Male 88.4
Sample D Male 94.2
Periaqueductal gray
nTPM: 96.6
Samples: 3

Max nTPM: 99.4
Min nTPM: 92.0
Sample B Female 98.3
Sample C Male 99.4
Sample D Male 92.0
Superior colliculi
nTPM: 109.5
Samples: 4

Max nTPM: 119.9
Min nTPM: 95.6
Sample A Female 119.9
Sample B Female 95.6
Sample C Male 113.8
Sample D Male 108.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 117.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 117.0
Samples: 4

Max nTPM: 119.5
Min nTPM: 112.8
Sample A Male 112.8
Sample B Male 118.2
Sample C Female 117.4
Sample D Female 119.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
68162254 Antisense, RP_041122_02_E11, Mouse strain C57BL/6J (56 days, male) 3.6

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