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  • NCAM1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:144.8 nTPM
HPA Brain:424.5 nTPM
GTEx:144.8 nTPM
FANTOM5:583.6 Scaled Tags Per Million
Pig:265.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

424.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 343.5
1981 Female, age 72, midline 372.1
2816 Male, age 47, midline 362.2
2194 Female, age 79, both hemispheres 358.4
2048 Male, age 55, midline 323.2
2565 Male, age 75, midline 301.6
Cervical spinal cord, dorsal horn
nTPM: 424.5
2296 Male, age 66, both hemispheres 573.6
2069 Male, age 47, both hemispheres 422.6
2173 Female, age 72, unknown 412.2
1877 Male, age 55, unknown 389.0
2721 Male, age 90, both hemispheres 387.9
2297 Male, age 75, both hemispheres 361.5
Cervical spinal cord, ventral horn
nTPM: 315.4
2098 Female, age 72, unknown 352.8
2820 Female, age 79, both hemispheres 352.4
2068 Male, age 55, unknown 348.3
2295 Male, age 66, both hemispheres 296.6
2480 Male, age 75, both hemispheres 275.8
2809 Male, age 90, both hemispheres 266.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 144.8
Samples: 204

Max nTPM: 263.2
Min nTPM: 50.8
Std nTPM: 36.6
Median nTPM: 141.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 263.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 260.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 247.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 245.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 221.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 221.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 214.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 210.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 210.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 209.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 206.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 205.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 200.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 197.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 197.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 197.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 197.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 194.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 192.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 190.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 189.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 189.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 189.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 187.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 187.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 186.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 184.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 183.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 180.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 179.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 179.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 178.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 177.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 177.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 176.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 176.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 175.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 175.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 174.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 174.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 174.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 173.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 173.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 172.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 172.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 172.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 171.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 171.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 170.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 170.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 169.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 168.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 168.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 168.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 168.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 167.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 167.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 166.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 166.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 165.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 163.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 163.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 163.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 163.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 163.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 162.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 161.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 161.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 160.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 160.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 160.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 159.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 159.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 158.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 157.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 157.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 157.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 156.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 156.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 155.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 155.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 155.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 154.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 152.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 152.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 152.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 151.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 150.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 150.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 149.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 149.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 147.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 147.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 147.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 146.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 146.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 144.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 143.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 143.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 142.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 141.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 141.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 141.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 141.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 140.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 139.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 138.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 138.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 138.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 138.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 137.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 137.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 137.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 136.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 135.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 135.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 134.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 134.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 134.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 134.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 133.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 133.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 133.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 133.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 132.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 131.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 131.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 131.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 131.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 131.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 130.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 129.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 129.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 128.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 127.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 126.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 126.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 126.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 126.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 124.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 124.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 122.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 122.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 120.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 120.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 120.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 119.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 119.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 118.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 118.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 117.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 117.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 115.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 115.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 115.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 114.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 114.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 114.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 113.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 113.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 112.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 112.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 110.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 110.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 110.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 110.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 109.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 109.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 109.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 108.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 108.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 108.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 107.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 106.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 106.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 106.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 106.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 105.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 105.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 104.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 104.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 103.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 103.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 102.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 102.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 100.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 100.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 98.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 97.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 97.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 95.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 94.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 93.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 89.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 88.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 85.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 81.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 81.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 81.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 81.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 77.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 76.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 75.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 50.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

583.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 583.6
FF:10181-103D1 60 years, female 610.7
FF:10159-103A6 76 years, female 556.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

265.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 236.7
Samples: 4

Max nTPM: 298.6
Min nTPM: 154.0
Sample A Female 298.6
Sample B Female 225.7
Sample C Male 154.0
Sample D Male 268.3
Ventral spinal cord
nTPM: 265.9
Samples: 4

Max nTPM: 320.8
Min nTPM: 232.8
Sample A Female 320.8
Sample B Female 253.8
Sample C Male 256.1
Sample D Male 232.8

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