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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:15.6 nTPM
HPA Brain:56.5 nTPM
GTEx:15.6 nTPM
FANTOM5:137.2 Scaled Tags Per Million
Pig:60.4 nTPM
Mouse:92.1 nTPM
Allen mouse:14.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.5
Sample id Sample description nTPM
Amygdala
nTPM: 49.5
2814 Male, age 76, right hemisphere 88.2
1987 Female, age 91, left hemisphere 44.7
2695 Female, age 67, right hemisphere 40.5
2517 Female, age 94, left hemisphere 37.0
2514 Male, age 75, right hemisphere 36.9
Basal amygdala
nTPM: 52.9
1955 Male, age 76, both hemispheres 63.8
2243 Female, age 91, right hemisphere 56.3
2685 Female, age 94, left hemisphere 53.8
2110 Male, age 80, left hemisphere 52.9
2827 Female, age 67, right hemisphere 46.4
2609 Male, age 75, right hemisphere 44.3
Central amygdala
nTPM: 56.5
1905 Male, age 76, both hemispheres 87.4
2239 Male, age 80, left hemisphere 50.0
2701 Female, age 91, right hemisphere 49.8
2826 Female, age 94, left hemisphere 49.6
2515 Male, age 75, right hemisphere 45.7
Corticomedial amygdala
nTPM: 49.4
2240 Male, age 76, both hemispheres 58.2
2829 Male, age 80, left hemisphere 53.4
2242 Female, age 91, right hemisphere 51.0
2535 Female, age 67, right hemisphere 45.6
2429 Female, age 94, left hemisphere 44.4
2428 Male, age 75, right hemisphere 43.7
Lateral amygdala
nTPM: 47.4
1883 Male, age 76, both hemispheres 66.0
2534 Female, age 94, left hemisphere 58.1
2255 Female, age 91, right hemisphere 46.3
2256 Male, age 80, left hemisphere 39.4
2830 Female, age 67, right hemisphere 39.2
2516 Male, age 75, right hemisphere 35.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 15.6
Samples: 181

Max nTPM: 38.7
Min nTPM: 2.5
Std nTPM: 7.9
Median nTPM: 14.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 38.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 38.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 36.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 34.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 32.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 32.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 32.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 31.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 31.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 30.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 30.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 29.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 29.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 29.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 28.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 27.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 27.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 26.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 26.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 26.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 26.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 25.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 25.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 24.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 24.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 24.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 23.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 23.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 23.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 23.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 23.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 23.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 23.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 23.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 23.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 23.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 23.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 21.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 21.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 21.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 21.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 21.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 21.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 21.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 21.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 21.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 21.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 20.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 20.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 20.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 20.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 20.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 20.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 20.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 20.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 19.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 19.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 19.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 19.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 19.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 19.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 19.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 18.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 18.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 18.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 18.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 18.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 18.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 17.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 17.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 17.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 17.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 16.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 16.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 16.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 16.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 15.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 15.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 15.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 15.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 15.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 15.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 15.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 15.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 14.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 14.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 14.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 14.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 14.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 14.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 14.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 14.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 13.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 13.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 13.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 13.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 13.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 12.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 12.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 12.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 12.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 12.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 12.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 12.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 12.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 12.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 12.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 11.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 11.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 11.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 11.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 11.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 11.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 11.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 10.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 10.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 10.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 10.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 10.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 10.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 10.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 10.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 10.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 9.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 9.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 9.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 9.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 9.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 9.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 9.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 9.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 9.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 9.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 9.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 8.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 8.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 8.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 8.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 8.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 8.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 8.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 8.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 8.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 8.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 8.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 8.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 8.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 7.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 7.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 7.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 7.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 7.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 7.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 7.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 7.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 7.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 6.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 6.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 6.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 6.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 6.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 6.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 6.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 6.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 6.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 6.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 6.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 5.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 5.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 5.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 5.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 5.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 5.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 5.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 5.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 4.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 4.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 4.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 4.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 4.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 2.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

137.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 137.2
FF:10151-102I7 76 years, female 137.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.4
Pig sample Sample description nTPM
Amygdala
nTPM: 60.4
Samples: 4

Max nTPM: 92.1
Min nTPM: 39.8
Sample A Female 92.1
Sample B Female 39.8
Sample C Male 49.4
Sample D Male 60.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 92.1
Samples: 4

Max nTPM: 105.5
Min nTPM: 81.8
Sample A Male 93.4
Sample B Male 81.8
Sample C Female 105.5
Sample D Female 87.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.3
73573157 Antisense, RP_051121_03_D06, Mouse strain C57BL/6J (56 days, male) 15.5
70565945 Antisense, RP_050628_01_G07, Mouse strain C57BL/6J (56 days, male) 13.7
74988751 Antisense, RP_060315_05_G06, Mouse strain C57BL/6J (56 days, male) 13.6

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