HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:27.6 nTPM
HPA Brain:69.6 nTPM
GTEx:27.6 nTPM
FANTOM5:90.4 Scaled Tags Per Million
Pig:47.5 nTPM
Mouse:52.1 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041274Antibody HPA061189
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 69.6
Sample id Sample description nTPM
Hippocampus
nTPM: 61.8
2148 Female, age 91, left hemisphere 69.3
1898 Male, age 80, left hemisphere 65.6
2621 Female, age 67, right hemisphere 63.6
1855 Male, age 76, left hemisphere 59.1
2529 Female, age 94, left hemisphere 58.3
1911 Female, age 85, right hemisphere 54.8
Dentate gyrus
nTPM: 60.5
1927 Female, age 91, both hemispheres 64.0
2530 Female, age 94, left hemisphere 63.6
2010 Male, age 76, both hemispheres 61.1
2246 Female, age 85, both hemispheres 61.1
2531 Female, age 67, both hemispheres 57.8
2528 Male, age 74, both hemispheres 55.1
Entorhinal gyrus
nTPM: 68.3
2613 Female, age 94, left hemisphere 77.3
2764 Male, age 80, right hemisphere 75.6
1938 Female, age 85, left hemisphere 71.4
1787 Male, age 76, left hemisphere 69.8
2117 Female, age 91, right hemisphere 60.4
2686 Male, age 75, right hemisphere 55.3
Hippocampus, CA1
nTPM: 65.6
2749 Male, age 80, left hemisphere 90.0
1873 Female, age 85, both hemispheres 61.9
2527 Male, age 74, both hemispheres 60.4
2045 Male, age 76, both hemispheres 58.0
2082 Female, age 91, right hemisphere 57.9
Hippocampus, CA2
nTPM: 62.2
1963 Male, age 80, left hemisphere 67.9
1892 Male, age 76, both hemispheres 65.4
2437 Female, age 94, left hemisphere 61.9
2249 Male, age 74, both hemispheres 61.8
1940 Female, age 85, left hemisphere 59.8
2113 Female, age 91, right hemisphere 56.6
Hippocampus, CA3
nTPM: 62.2
2137 Male, age 80, left hemisphere 73.3
2620 Female, age 94, left hemisphere 73.3
2861 Female, age 67, both hemispheres 59.3
2436 Male, age 74, both hemispheres 57.2
1867 Male, age 76, both hemispheres 57.0
1891 Female, age 85, both hemispheres 53.1
Parahippocampal cortex
nTPM: 63.6
2532 Female, age 72, left hemisphere 71.6
1933 Female, age 85, both hemispheres 68.7
2245 Female, age 91, both hemispheres 66.8
1850 Male, age 80, both hemispheres 65.1
1990 Female, age 91, right hemisphere 64.8
2622 Female, age 67, right hemisphere 62.6
2250 Female, age 67, right hemisphere 60.4
2692 Male, age 74, both hemispheres 58.8
2693 Female, age 94, both hemispheres 58.8
2018 Male, age 76, both hemispheres 58.4
Perirhinal gyrus
nTPM: 69.6
1794 Male, age 80, right hemisphere 77.2
1847 Female, age 91, left hemisphere 70.3
1841 Female, age 85, right hemisphere 69.9
2521 Female, age 94, right hemisphere 66.2
2848 Male, age 76, right hemisphere 64.2
Subiculum
nTPM: 59.4
1977 Female, age 85, both hemispheres 69.5
2619 Male, age 74, both hemispheres 60.9
1901 Male, age 80, both hemispheres 59.8
2729 Female, age 91, right hemisphere 57.4
2438 Female, age 94, left hemisphere 54.8
2042 Male, age 76, both hemispheres 53.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 27.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 27.6
Samples: 255

Max nTPM: 46.3
Min nTPM: 13.3
Std nTPM: 6.1
Median nTPM: 27.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 46.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 45.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 45.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 45.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 44.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 42.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 40.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 40.1
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 39.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 39.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 39.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 90.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 90.4
FF:10169-103B7 60 years, female 108.0
FF:10153-102I9 76 years, female 72.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 47.5
Pig sample Sample description nTPM
Subiculum
nTPM: 47.5
Samples: 4

Max nTPM: 58.9
Min nTPM: 40.6
Sample A Female 58.9
Sample B Female 43.8
Sample C Male 46.6
Sample D Male 40.6
Dorsal hippocampus
nTPM: 47.0
Samples: 4

Max nTPM: 57.2
Min nTPM: 36.4
Sample A Female 57.2
Sample B Female 54.7
Sample C Male 39.8
Sample D Male 36.4
Entorhinal cortex
nTPM: 45.4
Samples: 4

Max nTPM: 50.3
Min nTPM: 40.6
Sample A Female 50.3
Sample B Female 40.6
Sample C Male 48.8
Sample D Male 42.0
Ventral hippocampus
nTPM: 47.2
Samples: 4

Max nTPM: 54.5
Min nTPM: 37.3
Sample A Female 45.6
Sample B Female 37.3
Sample C Male 54.5
Sample D Male 51.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 52.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 52.1
Samples: 4

Max nTPM: 55.1
Min nTPM: 48.1
Sample A Male 50.9
Sample B Male 54.4
Sample C Female 48.1
Sample D Female 55.1
Hippocampal formation
nTPM: 50.6
Samples: 4

Max nTPM: 53.2
Min nTPM: 47.9
Sample A Male 48.1
Sample B Male 53.1
Sample C Female 53.2
Sample D Female 47.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
71495944 Antisense, RP_050913_03_H05, Mouse strain C57BL/6J (56 days, male) 0.2

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