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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:17.5 nTPM
GTEx:17.5 nTPM
FANTOM5:58.0 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 17.5
Samples: 105

Max nTPM: 23.6
Min nTPM: 11.5
Std nTPM: 2.1
Median nTPM:
99_1 64 years, male 23.6
356_1 87 years, female 23.0
218_1 71 years, female 21.7
347_1 72 years, male 21.2
42_1 85 years, male 21.1
350_1 84 years, female 20.9
322_1 76 years, male 20.8
295_1 61 years, female 20.5
386_1 76 years, male 20.5
4_1 88 years, female 20.2
317_1 60 years, male 20.2
352_1 62 years, male 20.2
353_1 82 years, female 20.2
173_1 67 years, male 20.1
355_1 70 years, female 20.0
153_1 70 years, female 19.8
354_1 81 years, female 19.6
335_1 73 years, female 19.4
293_1 68 years, female 19.3
452_1 88 years, female 19.3
35_1 74 years, female 19.2
394_1 75 years, female 19.2
2_1 77 years, female 19.1
142_1 61 years, female 18.9
379_1 60 years, male 18.9
447_1 81 years, male 18.9
348_1 84 years, male 18.8
6_1 73 years, female 18.7
163_1 78 years, male 18.7
266_1 85 years, male 18.7
321_1 62 years, female 18.7
404_1 82 years, female 18.7
286_1 68 years, female 18.5
377_1 82 years, female 18.5
119_1 70 years, female 18.4
109_1 81 years, female 18.3
384_1 83 years, male 18.2
126_1 63 years, male 18.1
319_1 81 years, male 18.1
406_1 79 years, male 18.1
145_1 84 years, male 18.0
349_1 83 years, male 18.0
499_1 55 years, female 18.0
137_1 83 years, male 17.9
172_1 72 years, female 17.9
17_1 71 years, male 17.8
117_1 61 years, male 17.8
251_1 78 years, male 17.8
320_1 89 years, female 17.8
177_1 74 years, male 17.7
376_1 75 years, female 17.6
139_1 64 years, female 17.5
425_1 59 years, female 17.5
162_1 79 years, female 17.4
229_1 69 years, female 17.4
292_1 71 years, male 17.4
503_1 68 years, male 17.4
389_1 86 years, female 17.2
41_1 94 years, female 17.1
254_1 77 years, female 17.1
351_1 91 years, male 17.1
405_1 91 years, male 17.1
189_1 76 years, male 17.0
246_1 77 years, male 17.0
318_1 68 years, male 17.0
480_1 63 years, male 17.0
314_1 67 years, male 16.9
243_1 75 years, male 16.8
32_1 67 years, male 16.7
291_1 76 years, male 16.6
375_1 74 years, female 16.6
506_1 65 years, male 16.6
89_1 63 years, male 16.5
288_1 66 years, female 16.5
115_1 83 years, male 16.4
237_1 82 years, male 16.4
264_1 73 years, female 16.4
468_1 89 years, male 16.3
517_1 88 years, male 16.3
311_1 78 years, male 16.2
315_1 62 years, female 16.1
307_1 66 years, female 16.0
43_1 64 years, female 15.9
120_1 70 years, female 15.9
396_1 62 years, male 15.7
9_1 66 years, female 15.5
313_1 79 years, female 15.5
149_1 88 years, male 15.4
308_1 70 years, female 15.4
518_1 75 years, female 15.4
265_1 87 years, male 15.3
324_1 76 years, male 15.3
466_1 57 years, female 15.0
495_1 57 years, female 14.9
501_1 88 years, male 14.9
526_1 61 years, male 14.8
18_1 88 years, male 14.5
316_1 62 years, male 14.5
217_1 76 years, male 14.2
81_1 67 years, male 14.0
413_1 59 years, female 13.8
415_1 77 years, female 13.0
491_1 89 years, female 13.0
414_1 84 years, female 12.9
490_1 67 years, female 11.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

58.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 58.0
FF:10030-101E3 24-65 years, mixed 58.0

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