HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.6 nTPM
HPA Brain:52.5 nTPM
GTEx:30.6 nTPM
FANTOM5:64.0 Scaled Tags Per Million
Pig:15.0 nTPM
Mouse:25.5 nTPM
Allen mouse:15.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 52.5
Sample id Sample description nTPM
Hippocampus
nTPM: 49.3
2148 Female, age 91, left hemisphere 67.6
2621 Female, age 67, right hemisphere 63.2
1898 Male, age 80, left hemisphere 47.7
2529 Female, age 94, left hemisphere 39.8
1911 Female, age 85, right hemisphere 38.8
1855 Male, age 76, left hemisphere 38.6
Dentate gyrus
nTPM: 50.8
2531 Female, age 67, both hemispheres 64.7
1927 Female, age 91, both hemispheres 62.8
2530 Female, age 94, left hemisphere 56.1
2528 Male, age 74, both hemispheres 51.3
2246 Female, age 85, both hemispheres 38.6
2010 Male, age 76, both hemispheres 31.4
Entorhinal gyrus
nTPM: 42.7
2613 Female, age 94, left hemisphere 62.7
2686 Male, age 75, right hemisphere 49.5
2764 Male, age 80, right hemisphere 43.2
1787 Male, age 76, left hemisphere 37.5
1938 Female, age 85, left hemisphere 36.5
2117 Female, age 91, right hemisphere 27.0
Hippocampus, CA1
nTPM: 43.7
2749 Male, age 80, left hemisphere 62.3
2527 Male, age 74, both hemispheres 47.5
1873 Female, age 85, both hemispheres 44.0
2045 Male, age 76, both hemispheres 34.2
2082 Female, age 91, right hemisphere 30.3
Hippocampus, CA2
nTPM: 42.2
2437 Female, age 94, left hemisphere 55.0
1963 Male, age 80, left hemisphere 53.7
1892 Male, age 76, both hemispheres 44.4
2249 Male, age 74, both hemispheres 37.1
2113 Female, age 91, right hemisphere 33.1
1940 Female, age 85, left hemisphere 29.8
Hippocampus, CA3
nTPM: 52.5
2861 Female, age 67, both hemispheres 80.0
2620 Female, age 94, left hemisphere 79.1
2137 Male, age 80, left hemisphere 55.9
1867 Male, age 76, both hemispheres 34.2
1891 Female, age 85, both hemispheres 33.1
2436 Male, age 74, both hemispheres 32.7
Parahippocampal cortex
nTPM: 43.1
2245 Female, age 91, both hemispheres 58.8
2622 Female, age 67, right hemisphere 57.8
2250 Female, age 67, right hemisphere 54.1
2693 Female, age 94, both hemispheres 48.1
2692 Male, age 74, both hemispheres 41.0
1990 Female, age 91, right hemisphere 40.9
1933 Female, age 85, both hemispheres 36.8
2532 Female, age 72, left hemisphere 35.2
1850 Male, age 80, both hemispheres 34.2
2018 Male, age 76, both hemispheres 24.5
Perirhinal gyrus
nTPM: 40.6
2521 Female, age 94, right hemisphere 57.0
1847 Female, age 91, left hemisphere 46.3
1794 Male, age 80, right hemisphere 39.4
1841 Female, age 85, right hemisphere 32.1
2848 Male, age 76, right hemisphere 28.0
Subiculum
nTPM: 36.4
2619 Male, age 74, both hemispheres 50.1
2438 Female, age 94, left hemisphere 40.4
2729 Female, age 91, right hemisphere 36.9
1901 Male, age 80, both hemispheres 35.5
1977 Female, age 85, both hemispheres 32.6
2042 Male, age 76, both hemispheres 22.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 30.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.6
Samples: 255

Max nTPM: 91.7
Min nTPM: 1.5
Std nTPM: 15.4
Median nTPM: 30.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 91.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 85.5
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 84.4
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 80.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 69.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 68.1
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 63.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 62.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 59.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 54.1
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 53.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 64.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 64.0
FF:10153-102I9 76 years, female 67.9
FF:10169-103B7 60 years, female 60.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 15.0
Pig sample Sample description nTPM
Subiculum
nTPM: 9.2
Samples: 4

Max nTPM: 13.0
Min nTPM: 7.4
Sample A Female 13.0
Sample B Female 7.5
Sample C Male 8.8
Sample D Male 7.4
Dorsal hippocampus
nTPM: 10.4
Samples: 4

Max nTPM: 12.1
Min nTPM: 8.3
Sample A Female 9.6
Sample B Female 12.1
Sample C Male 8.3
Sample D Male 11.7
Entorhinal cortex
nTPM: 15.0
Samples: 4

Max nTPM: 18.2
Min nTPM: 12.2
Sample A Female 13.7
Sample B Female 15.8
Sample C Male 12.2
Sample D Male 18.2
Ventral hippocampus
nTPM: 9.4
Samples: 4

Max nTPM: 11.0
Min nTPM: 7.0
Sample A Female 7.0
Sample B Female 8.8
Sample C Male 11.0
Sample D Male 10.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 25.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 25.5
Samples: 4

Max nTPM: 28.1
Min nTPM: 22.5
Sample A Male 28.1
Sample B Male 27.7
Sample C Female 23.6
Sample D Female 22.5
Hippocampal formation
nTPM: 22.1
Samples: 4

Max nTPM: 23.6
Min nTPM: 20.7
Sample A Male 20.7
Sample B Male 23.6
Sample C Female 21.5
Sample D Female 22.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 15.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 15.4
75831762 Antisense, RP_060601_02_D11, Mouse strain C57BL/6J (56 days, male) 15.4

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