We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TMEM219
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • TMEM219
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:224.7 nTPM
HPA Brain:128.8 nTPM
GTEx:224.7 nTPM
FANTOM5:44.6 Scaled Tags Per Million
Pig:37.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 114.3
2565 Male, age 75, midline 139.5
1981 Female, age 72, midline 125.5
2194 Female, age 79, both hemispheres 105.6
2816 Male, age 47, midline 105.3
2048 Male, age 55, midline 95.5
Cervical spinal cord, dorsal horn
nTPM: 96.3
2173 Female, age 72, unknown 129.0
2296 Male, age 66, both hemispheres 94.3
1877 Male, age 55, unknown 93.8
2297 Male, age 75, both hemispheres 90.7
2069 Male, age 47, both hemispheres 90.1
2721 Male, age 90, both hemispheres 79.7
Cervical spinal cord, ventral horn
nTPM: 128.8
2809 Male, age 90, both hemispheres 154.3
2480 Male, age 75, both hemispheres 153.9
2295 Male, age 66, both hemispheres 134.3
2098 Female, age 72, unknown 124.1
2068 Male, age 55, unknown 111.8
2820 Female, age 79, both hemispheres 94.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

224.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 224.7
Samples: 204

Max nTPM: 462.1
Min nTPM: 100.5
Std nTPM: 65.0
Median nTPM: 215.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 462.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 454.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 447.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 411.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 394.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 394.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 371.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 371.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 366.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 360.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 346.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 335.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 330.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 330.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 329.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 324.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 323.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 318.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 312.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 311.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 310.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 310.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 309.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 306.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 303.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 291.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 289.6
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 287.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 287.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 286.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 280.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 280.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 279.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 278.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 277.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 276.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 274.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 272.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 270.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 268.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 268.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 264.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 262.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 260.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 260.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 260.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 260.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 260.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 255.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 254.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 254.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 254.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 253.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 251.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 250.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 248.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 248.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 248.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 248.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 248.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 247.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 246.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 246.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 245.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 244.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 244.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 244.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 243.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 243.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 242.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 241.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 238.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 238.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 236.3
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 235.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 234.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 233.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 232.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 232.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 230.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 230.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 230.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 228.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 228.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 228.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 227.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 227.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 226.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 225.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 225.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 224.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 223.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 222.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 221.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 220.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 220.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 220.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 220.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 220.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 218.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 217.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 215.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 215.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 215.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 214.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 214.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 213.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 213.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 212.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 212.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 211.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 210.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 210.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 209.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 209.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 208.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 208.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 208.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 207.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 205.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 205.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 203.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 203.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 202.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 201.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 200.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 200.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 199.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 198.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 198.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 196.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 194.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 194.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 194.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 193.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 193.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 192.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 190.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 189.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 189.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 188.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 188.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 187.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 187.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 186.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 185.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 182.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 181.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 181.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 181.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 180.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 180.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 179.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 176.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 176.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 175.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 174.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 174.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 174.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 174.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 173.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 173.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 173.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 171.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 170.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 169.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 169.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 167.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 166.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 165.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 164.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 164.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 163.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 161.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 160.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 158.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 157.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 157.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 157.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 157.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 157.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 156.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 156.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 155.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 154.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 153.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 151.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 151.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 151.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 146.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 142.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 141.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 139.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 137.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 135.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 134.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 131.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 129.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 126.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 119.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 117.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 110.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 102.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 100.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

44.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 44.6
FF:10181-103D1 60 years, female 52.9
FF:10159-103A6 76 years, female 36.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 35.5
Samples: 4

Max nTPM: 44.9
Min nTPM: 30.9
Sample A Female 31.5
Sample B Female 34.8
Sample C Male 44.9
Sample D Male 30.9
Ventral spinal cord
nTPM: 37.9
Samples: 4

Max nTPM: 41.0
Min nTPM: 34.3
Sample A Female 34.3
Sample B Female 41.0
Sample C Male 37.6
Sample D Male 38.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo