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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • SAP18
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:138.0 nTPM
FANTOM5:218.6 Scaled Tags Per Million
Pig:34.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA011352Antibody CAB012273
Glial cells HighHigh
Neuronal cells HighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 138.0
Samples: 300

Max nTPM: 340.0
Min nTPM: 83.4
Std nTPM: 30.9
Median nTPM: 134.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 340.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 234.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 233.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 228.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 226.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 223.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 219.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 215.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 212.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 210.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 210.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 204.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 202.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 199.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 197.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 196.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 193.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 191.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 190.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 190.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 187.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 186.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 185.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 185.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 181.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 176.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 175.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 175.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 175.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 173.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 172.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 172.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 171.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 170.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 170.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 169.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 169.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 168.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 168.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 168.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 167.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 166.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 165.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 164.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 164.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 164.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 164.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 163.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 163.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 162.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 161.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 161.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 161.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 161.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 159.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 159.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 159.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 158.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 157.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 157.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 157.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 154.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 154.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 153.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 152.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 152.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 152.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 151.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 151.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 151.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 150.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 149.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 149.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 149.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 149.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 148.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 148.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 148.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 148.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 148.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 148.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 148.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 147.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 147.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 147.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 147.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 147.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 147.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 147.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 147.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 146.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 146.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 146.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 146.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 146.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 145.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 145.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 145.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 145.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 145.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 145.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 144.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 144.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 144.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 144.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 144.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 143.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 143.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 143.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 142.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 142.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 142.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 142.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 142.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 142.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 142.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 141.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 141.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 141.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 141.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 141.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 141.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 141.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 140.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 140.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 140.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 140.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 140.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 139.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 139.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 139.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 139.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 139.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 138.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 138.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 138.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 138.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 138.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 136.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 136.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 135.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 135.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 134.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 134.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 134.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 134.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 134.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 134.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 134.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 134.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 134.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 134.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 133.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 133.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 133.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 133.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 133.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 133.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 133.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 132.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 132.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 132.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 132.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 132.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 132.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 131.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 131.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 131.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 131.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 130.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 130.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 130.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 130.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 130.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 130.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 130.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 129.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 129.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 129.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 128.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 128.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 128.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 128.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 127.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 127.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 127.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 126.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 126.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 126.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 126.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 126.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 126.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 125.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 125.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 125.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 125.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 125.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 125.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 125.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 124.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 124.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 124.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 124.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 123.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 122.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 122.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 122.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 121.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 121.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 121.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 121.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 121.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 120.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 120.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 120.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 120.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 119.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 119.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 118.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 118.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 118.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 118.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 118.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 117.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 117.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 117.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 116.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 116.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 115.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 115.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 115.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 115.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 114.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 114.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 114.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 114.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 114.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 114.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 113.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 113.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 113.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 113.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 112.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 112.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 112.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 111.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 111.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 111.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 110.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 110.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 110.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 110.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 110.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 109.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 108.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 107.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 106.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 106.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 106.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 105.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 105.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 105.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 105.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 105.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 104.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 104.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 104.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 104.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 104.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 103.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 103.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 102.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 101.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 101.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 100.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 100.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 100.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 100.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 100.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 99.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 99.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 99.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 98.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 98.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 98.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 97.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 97.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 95.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 95.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 95.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 94.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 93.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 93.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 93.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 93.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 92.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 91.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 85.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 84.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 83.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

218.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 218.6
FF:10164-103B2 76 years, female 218.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.1
Pig sample Sample description nTPM
Caudate
nTPM: 34.1
Samples: 4

Max nTPM: 38.6
Min nTPM: 31.0
Sample A Female 32.1
Sample B Female 34.6
Sample C Male 38.6
Sample D Male 31.0

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