MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:139.5 nTPM
HPA Brain:323.5 nTPM
GTEx:139.5 nTPM
FANTOM5:171.6 Scaled Tags Per Million
Pig:504.9 nTPM
Mouse:522.1 nTPM
Allen mouse:16.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 323.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 221.0
1827 Male, age 72, unknown 303.9
2828 Female, age 72, unknown 289.5
2219 Male, age 76, both hemispheres 288.6
2586 Male, age 75, left hemisphere 227.7
1870 Female, age 42, unknown 220.6
1833 Male, age 53, unknown 202.8
2411 Female, age 72, unknown 185.3
1830 Male, age 51, unknown 182.2
2666 Male, age 74, left hemisphere 159.6
2019 Male, age 18, unknown 149.9
Dorsal raphe nucleus
nTPM: 252.5
2298 Female, age 72, unknown 334.2
2047 Male, age 72, unknown 250.9
2016 Female, age 72, unknown 250.2
1828 Male, age 53, unknown 233.4
2750 Male, age 76, both hemispheres 193.8
Inferior colliculus
nTPM: 303.9
2097 Female, age 72, unknown 354.8
1848 Female, age 42, unknown 332.6
1890 Male, age 53, unknown 267.1
2849 Male, age 72, unknown 261.2
Median raphe nucleus
nTPM: 189.7
2220 Male, age 76, midline 189.7
Periaquaductal grey, anterior
nTPM: 323.5
1947 Male, age 18, unknown 379.3
1795 Male, age 51, unknown 303.4
2502 Female, age 75, unknown 287.8
Periaquaductal grey, dorsal
nTPM: 294.8
1840 Male, age 53, unknown 403.5
2464 Female, age 72, unknown 281.1
2850 Male, age 76, both hemispheres 273.2
1831 Male, age 72, unknown 221.2
Periaquaductal grey, lateral
nTPM: 273.1
2053 Male, age 18, unknown 335.5
2140 Male, age 76, both hemispheres 287.0
2272 Male, age 74, both hemispheres 196.8
Pretectal area
nTPM: 307.3
2273 Male, age 74, both hemispheres 397.5
2667 Female, age 75, unknown 356.5
1816 Male, age 51, unknown 356.2
2224 Female, age 72, unknown 345.0
2825 Male, age 18, unknown 313.5
1944 Female, age 72, unknown 303.1
1817 Female, age 42, unknown 281.9
2316 Male, age 76, right hemisphere 276.2
1815 Male, age 53, unknown 262.1
2407 Male, age 75, both hemispheres 253.1
2007 Male, age 72, unknown 234.7
Red nucleus
nTPM: 199.9
2725 Female, age 75, unknown 240.2
2503 Female, age 72, unknown 238.5
1821 Female, age 72, unknown 238.1
1954 Female, age 42, unknown 219.9
2769 Male, age 72, unknown 214.6
2227 Male, age 72, unknown 212.5
1904 Male, age 53, unknown 207.9
2823 Male, age 76, right hemisphere 205.5
1865 Male, age 51, unknown 188.9
2588 Male, age 74, left hemisphere 171.8
2785 Male, age 18, unknown 132.8
2584 Male, age 75, left hemisphere 127.7
Substantia nigra
nTPM: 230.5
1916 Female, age 42, unknown 281.6
2241 Male, age 72, unknown 279.5
1889 Female, age 72, unknown 267.0
2699 Male, age 18, unknown 252.4
1851 Male, age 51, unknown 245.4
2409 Female, age 72, unknown 232.7
2590 Female, age 75, unknown 198.5
2665 Male, age 74, both hemispheres 191.0
2583 Male, age 75, right hemisphere 189.5
1941 Male, age 53, unknown 167.6
Superior colliculus
nTPM: 274.1
1796 Male, age 53, unknown 346.5
2261 Male, age 18, unknown 334.4
2087 Female, age 72, unknown 313.6
2664 Male, age 75, both hemispheres 291.9
1839 Male, age 51, unknown 274.5
1895 Male, age 76, right hemisphere 261.5
1995 Male, age 72, unknown 251.6
2668 Female, age 75, unknown 239.9
2587 Male, age 74, left hemisphere 215.9
1913 Female, age 42, unknown 210.7
Ventral tegmental area
nTPM: 241.4
2223 Female, age 72, unknown 253.4
2021 Male, age 53, unknown 252.2
1915 Female, age 42, unknown 245.2
1942 Male, age 51, unknown 242.4
2410 Female, age 72, unknown 238.1
2218 Male, age 76, both hemispheres 216.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 139.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 139.5
Samples: 183

Max nTPM: 577.1
Min nTPM: 13.9
Std nTPM: 73.6
Median nTPM: 132.4
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 577.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 469.9
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 383.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 354.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 299.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 282.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 273.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 269.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 268.7
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 264.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 257.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 171.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 171.6
FF:10158-103A5 76 years, female 171.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 504.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 376.1
Samples: 4

Max nTPM: 471.6
Min nTPM: 310.2
Sample A Female 471.6
Sample B Female 342.2
Sample C Male 380.5
Sample D Male 310.2
Midbrain
nTPM: 504.9
Samples: 4

Max nTPM: 643.5
Min nTPM: 429.3
Sample A Female 643.5
Sample B Female 449.1
Sample C Male 497.8
Sample D Male 429.3
Periaqueductal gray
nTPM: 458.4
Samples: 3

Max nTPM: 473.3
Min nTPM: 428.9
Sample B Female 472.9
Sample C Male 473.3
Sample D Male 428.9
Superior colliculi
nTPM: 358.9
Samples: 4

Max nTPM: 405.3
Min nTPM: 252.1
Sample A Female 405.3
Sample B Female 252.1
Sample C Male 378.1
Sample D Male 400.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 522.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 522.1
Samples: 4

Max nTPM: 545.7
Min nTPM: 500.7
Sample A Male 500.7
Sample B Male 526.4
Sample C Female 545.7
Sample D Female 515.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 16.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.5
68080704 Antisense, RP_040929_01_G03, Mouse strain C57BL/6J (56 days, male) 16.5

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