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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
136.9
Sample id
Sample description
nTPM
Amygdala nTPM: 101.4
2514
Male, age 75, right hemisphere
116.6
2517
Female, age 94, left hemisphere
116.3
1987
Female, age 91, left hemisphere
104.7
2814
Male, age 76, right hemisphere
86.8
2695
Female, age 67, right hemisphere
82.6
Basal amygdala nTPM: 131.1
2685
Female, age 94, left hemisphere
160.1
2243
Female, age 91, right hemisphere
159.5
2110
Male, age 80, left hemisphere
143.4
1955
Male, age 76, both hemispheres
117.5
2827
Female, age 67, right hemisphere
108.8
2609
Male, age 75, right hemisphere
97.4
Central amygdala nTPM: 102.3
2239
Male, age 80, left hemisphere
152.7
2701
Female, age 91, right hemisphere
105.5
2515
Male, age 75, right hemisphere
91.0
1905
Male, age 76, both hemispheres
83.2
2826
Female, age 94, left hemisphere
79.2
Corticomedial amygdala nTPM: 136.9
2242
Female, age 91, right hemisphere
158.8
2829
Male, age 80, left hemisphere
158.4
2429
Female, age 94, left hemisphere
154.2
2240
Male, age 76, both hemispheres
126.4
2428
Male, age 75, right hemisphere
111.7
2535
Female, age 67, right hemisphere
111.7
Lateral amygdala nTPM: 112.2
2534
Female, age 94, left hemisphere
122.0
2256
Male, age 80, left hemisphere
111.8
2516
Male, age 75, right hemisphere
111.1
2255
Female, age 91, right hemisphere
110.1
2830
Female, age 67, right hemisphere
110.0
1883
Male, age 76, both hemispheres
108.2
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
37.8
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 37.8
Samples: 181
Max nTPM: 83.4
Min nTPM: 7.2
Std nTPM: 15.0
Median nTPM: 37.0
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
83.4
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
83.3
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
78.6
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
74.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
65.0
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
64.6
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
63.8
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
63.2
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
63.1
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
62.6
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
61.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
60.8
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
60.2
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
60.2
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
59.7
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
57.7
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
57.3
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
57.0
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
56.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
56.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
55.7
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
55.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
55.4
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
55.0
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
54.8
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
54.5
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
54.2
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
53.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
53.1
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
52.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
52.4
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
52.2
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
52.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
51.9
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
51.3
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
51.1
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
51.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
51.0
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
50.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
50.7
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
50.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
50.6
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
50.2
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
49.5
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
49.4
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
49.4
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
48.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
48.3
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
47.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
47.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
47.1
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
46.9
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
46.6
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
46.4
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
46.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
44.9
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
44.8
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
44.7
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
43.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
43.6
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
43.5
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
43.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
43.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
43.1
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
43.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
42.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
42.7
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
42.2
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
41.8
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
41.8
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
41.7
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
41.7
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
41.7
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
41.5
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
41.2
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
40.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
40.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
40.1
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
40.0
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
39.9
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
39.7
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
39.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
39.4
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
38.4
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
38.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
38.3
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
37.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
37.8
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
37.8
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
37.5
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
37.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
37.0
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
36.9
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
36.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
36.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
36.6
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
36.5
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
36.5
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
36.3
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
36.3
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
35.8
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
34.9
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
34.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
34.3
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
34.1
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
33.9
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
33.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
33.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
33.5
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
32.1
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
31.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
31.7
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
31.3
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
31.3
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
31.1
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
30.7
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
30.6
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
29.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
29.2
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
28.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
28.9
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
28.9
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
28.6
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
28.4
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
28.4
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
28.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
28.0
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
27.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
27.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
27.8
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
27.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
27.6
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
26.9
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
26.5
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
26.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
26.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
25.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
25.3
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
24.8
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
24.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
24.5
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
24.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
24.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
23.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
23.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
23.6
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
23.1
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
23.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
22.9
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
22.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
22.0
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
21.9
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
20.9
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
20.4
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
19.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
19.2
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
19.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
18.9
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
18.8
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
18.7
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
18.3
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
18.3
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
18.3
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
18.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
17.9
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
17.8
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
17.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
17.0
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
16.9
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
16.9
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
16.3
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
16.2
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
16.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
15.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
15.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
15.5
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
14.4
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
13.4
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
13.1
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
8.9
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
7.2
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
133.2
Pig sample
Sample description
nTPM
Amygdala nTPM: 133.3
Samples: 4
Max nTPM: 141.2
Min nTPM: 127.1
Sample A
Female
141.2
Sample B
Female
129.3
Sample C
Male
135.4
Sample D
Male
127.1
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
133.5
Mouse sample
Sample description
nTPM
Amygdala nTPM: 133.5
Samples: 4
Max nTPM: 151.1
Min nTPM: 119.4
Sample A
Male
119.4
Sample B
Male
133.6
Sample C
Female
151.1
Sample D
Female
129.8
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
