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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:939.5 nTPM
HPA Brain:1028.8 nTPM
GTEx:939.5 nTPM
FANTOM5:1138.2 Scaled Tags Per Million
Pig:624.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1028.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1012.0
1981 Female, age 72, midline 1323.9
2194 Female, age 79, both hemispheres 991.7
2048 Male, age 55, midline 986.3
2816 Male, age 47, midline 904.0
2565 Male, age 75, midline 854.2
Cervical spinal cord, dorsal horn
nTPM: 1028.8
2296 Male, age 66, both hemispheres 1331.7
2173 Female, age 72, unknown 1308.3
2069 Male, age 47, both hemispheres 1215.5
1877 Male, age 55, unknown 831.8
2721 Male, age 90, both hemispheres 758.0
2297 Male, age 75, both hemispheres 727.7
Cervical spinal cord, ventral horn
nTPM: 990.9
2098 Female, age 72, unknown 1674.5
2809 Male, age 90, both hemispheres 968.5
2068 Male, age 55, unknown 962.2
2295 Male, age 66, both hemispheres 882.9
2480 Male, age 75, both hemispheres 753.6
2820 Female, age 79, both hemispheres 703.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

939.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 939.5
Samples: 204

Max nTPM: 2697.7
Min nTPM: 478.1
Std nTPM: 358.1
Median nTPM: 839.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2697.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2553.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 2139.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1966.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1818.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1757.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1705.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1688.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1671.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 1664.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1625.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1570.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1567.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1519.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 1509.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1488.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1488.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1461.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1454.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1439.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1436.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1423.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1381.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1376.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1324.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1319.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1314.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 1309.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1304.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1302.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 1287.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1269.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1261.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 1254.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 1252.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 1248.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1242.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 1241.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 1240.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1229.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 1204.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1190.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1177.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1165.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1124.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 1124.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1116.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1111.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1111.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1108.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 1101.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 1097.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1091.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1054.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1054.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 1052.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1050.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1037.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1034.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1032.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 1026.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 1025.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 1024.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1021.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1021.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1018.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1011.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1009.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 995.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 995.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 991.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 972.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 971.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 969.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 963.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 963.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 959.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 951.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 949.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 948.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 941.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 930.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 926.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 923.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 902.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 900.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 898.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 897.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 885.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 882.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 880.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 872.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 871.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 865.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 864.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 860.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 858.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 855.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 849.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 846.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 846.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 840.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 839.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 836.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 827.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 825.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 824.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 820.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 813.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 805.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 803.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 801.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 798.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 794.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 793.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 792.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 791.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 790.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 789.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 784.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 783.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 781.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 773.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 773.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 771.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 769.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 766.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 764.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 758.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 756.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 754.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 747.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 746.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 744.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 733.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 729.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 727.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 724.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 723.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 723.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 722.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 717.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 716.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 708.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 706.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 701.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 698.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 698.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 696.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 689.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 688.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 681.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 679.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 678.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 677.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 673.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 673.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 672.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 671.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 670.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 669.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 665.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 663.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 661.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 660.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 659.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 658.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 653.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 652.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 644.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 643.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 638.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 630.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 628.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 627.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 619.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 617.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 616.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 608.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 606.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 603.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 603.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 594.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 588.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 588.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 587.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 581.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 581.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 578.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 577.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 568.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 565.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 561.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 558.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 555.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 553.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 549.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 542.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 535.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 525.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 510.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 507.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 488.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 478.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1138.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1138.2
FF:10159-103A6 76 years, female 1485.3
FF:10181-103D1 60 years, female 791.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

624.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 568.6
Samples: 4

Max nTPM: 804.8
Min nTPM: 437.1
Sample A Female 437.1
Sample B Female 514.8
Sample C Male 804.8
Sample D Male 517.6
Ventral spinal cord
nTPM: 624.3
Samples: 4

Max nTPM: 701.7
Min nTPM: 552.3
Sample A Female 552.3
Sample B Female 633.3
Sample C Male 701.7
Sample D Male 610.0

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