MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.3 nTPM
HPA Brain:36.5 nTPM
GTEx:32.3 nTPM
FANTOM5:17.6 Scaled Tags Per Million
Pig:28.3 nTPM
Mouse:45.0 nTPM
Allen mouse:1.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.1
1870 Female, age 42, unknown 38.3
1830 Male, age 51, unknown 37.9
2411 Female, age 72, unknown 36.3
1833 Male, age 53, unknown 34.6
2019 Male, age 18, unknown 33.0
2586 Male, age 75, left hemisphere 32.4
2666 Male, age 74, left hemisphere 29.2
2828 Female, age 72, unknown 27.6
1827 Male, age 72, unknown 27.5
2219 Male, age 76, both hemispheres 23.9
Dorsal raphe nucleus
nTPM: 33.9
2016 Female, age 72, unknown 38.5
2750 Male, age 76, both hemispheres 36.2
1828 Male, age 53, unknown 33.1
2298 Female, age 72, unknown 33.0
2047 Male, age 72, unknown 28.7
Inferior colliculus
nTPM: 34.1
2097 Female, age 72, unknown 37.0
1848 Female, age 42, unknown 35.2
1890 Male, age 53, unknown 33.4
2849 Male, age 72, unknown 30.8
Median raphe nucleus
nTPM: 33.0
2220 Male, age 76, midline 33.0
Periaquaductal grey, anterior
nTPM: 32.4
2502 Female, age 75, unknown 36.9
1947 Male, age 18, unknown 32.5
1795 Male, age 51, unknown 27.9
Periaquaductal grey, dorsal
nTPM: 32.7
2464 Female, age 72, unknown 36.4
1831 Male, age 72, unknown 32.4
1840 Male, age 53, unknown 31.8
2850 Male, age 76, both hemispheres 30.3
Periaquaductal grey, lateral
nTPM: 30.6
2140 Male, age 76, both hemispheres 31.3
2053 Male, age 18, unknown 30.9
2272 Male, age 74, both hemispheres 29.6
Pretectal area
nTPM: 29.7
2224 Female, age 72, unknown 32.5
1944 Female, age 72, unknown 32.4
2825 Male, age 18, unknown 32.0
1815 Male, age 53, unknown 31.7
1817 Female, age 42, unknown 31.5
2667 Female, age 75, unknown 30.9
2273 Male, age 74, both hemispheres 29.5
2316 Male, age 76, right hemisphere 27.9
1816 Male, age 51, unknown 26.9
2007 Male, age 72, unknown 26.8
2407 Male, age 75, both hemispheres 24.7
Red nucleus
nTPM: 36.5
1904 Male, age 53, unknown 43.0
1821 Female, age 72, unknown 42.6
1954 Female, age 42, unknown 41.8
1865 Male, age 51, unknown 40.4
2227 Male, age 72, unknown 39.4
2503 Female, age 72, unknown 39.2
2823 Male, age 76, right hemisphere 36.9
2769 Male, age 72, unknown 36.8
2785 Male, age 18, unknown 31.8
2725 Female, age 75, unknown 30.3
2584 Male, age 75, left hemisphere 28.3
2588 Male, age 74, left hemisphere 27.4
Substantia nigra
nTPM: 33.8
2241 Male, age 72, unknown 44.8
2409 Female, age 72, unknown 41.2
1889 Female, age 72, unknown 34.6
2699 Male, age 18, unknown 34.6
2583 Male, age 75, right hemisphere 34.3
1851 Male, age 51, unknown 32.5
1941 Male, age 53, unknown 31.0
1916 Female, age 42, unknown 30.0
2590 Female, age 75, unknown 28.8
2665 Male, age 74, both hemispheres 25.8
Superior colliculus
nTPM: 32.2
1913 Female, age 42, unknown 37.1
2668 Female, age 75, unknown 37.1
1995 Male, age 72, unknown 35.7
1895 Male, age 76, right hemisphere 34.3
1839 Male, age 51, unknown 32.2
2261 Male, age 18, unknown 30.6
2587 Male, age 74, left hemisphere 30.6
2087 Female, age 72, unknown 30.3
1796 Male, age 53, unknown 27.9
2664 Male, age 75, both hemispheres 26.7
Ventral tegmental area
nTPM: 33.2
2410 Female, age 72, unknown 35.9
2223 Female, age 72, unknown 35.4
1915 Female, age 42, unknown 33.6
1942 Male, age 51, unknown 32.2
2021 Male, age 53, unknown 31.4
2218 Male, age 76, both hemispheres 31.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.3
Samples: 183

Max nTPM: 55.2
Min nTPM: 17.8
Std nTPM: 7.7
Median nTPM: 31.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 55.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 49.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 49.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 49.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 48.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 48.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 47.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 47.2
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 46.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 46.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 46.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 17.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.6
FF:10158-103A5 76 years, female 17.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 28.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.2
Samples: 4

Max nTPM: 30.9
Min nTPM: 22.7
Sample A Female 30.9
Sample B Female 26.5
Sample C Male 28.7
Sample D Male 22.7
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 32.2
Min nTPM: 23.7
Sample A Female 31.9
Sample B Female 32.2
Sample C Male 23.7
Sample D Male 25.2
Periaqueductal gray
nTPM: 24.8
Samples: 3

Max nTPM: 25.4
Min nTPM: 24.1
Sample B Female 24.1
Sample C Male 25.4
Sample D Male 24.8
Superior colliculi
nTPM: 26.3
Samples: 4

Max nTPM: 30.8
Min nTPM: 23.6
Sample A Female 26.2
Sample B Female 30.8
Sample C Male 24.7
Sample D Male 23.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 45.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.0
Samples: 4

Max nTPM: 46.9
Min nTPM: 41.7
Sample A Male 45.2
Sample B Male 41.7
Sample C Female 46.3
Sample D Female 46.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
513228 Antisense, RP_040810_01_C04, Mouse strain C57BL/6J (56 days, male) 5.9
70566130 Antisense, RP_050628_02_D03, Mouse strain C57BL/6J (56 days, male) 0.1
73931418 Antisense, RP_051214_04_E10, Mouse strain C57BL/6J (56 days, male) 0.0
80342061 Antisense, RP_071204_04_D03, Mouse strain C57BL/6J (56 days, male) 0.0

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