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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:718.9 nTPM
HPA Brain:520.2 nTPM
GTEx:718.9 nTPM
FANTOM5:353.6 Scaled Tags Per Million
Pig:215.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

520.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 410.1
1981 Female, age 72, midline 502.7
2194 Female, age 79, both hemispheres 457.0
2048 Male, age 55, midline 402.3
2565 Male, age 75, midline 379.1
2816 Male, age 47, midline 309.4
Cervical spinal cord, dorsal horn
nTPM: 390.0
2173 Female, age 72, unknown 627.0
2069 Male, age 47, both hemispheres 432.2
2296 Male, age 66, both hemispheres 377.1
1877 Male, age 55, unknown 367.7
2297 Male, age 75, both hemispheres 319.0
2721 Male, age 90, both hemispheres 216.7
Cervical spinal cord, ventral horn
nTPM: 520.2
2480 Male, age 75, both hemispheres 736.5
2068 Male, age 55, unknown 586.9
2809 Male, age 90, both hemispheres 545.8
2820 Female, age 79, both hemispheres 517.6
2295 Male, age 66, both hemispheres 405.7
2098 Female, age 72, unknown 328.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

718.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 718.9
Samples: 204

Max nTPM: 2271.1
Min nTPM: 228.6
Std nTPM: 277.5
Median nTPM: 674.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2271.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 1358.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 1350.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 1255.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1243.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1228.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1192.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1182.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1172.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1170.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1164.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1157.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1157.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1143.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1137.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1134.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1112.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1106.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1105.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1096.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1090.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1080.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1071.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1067.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1062.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1061.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1059.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1050.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1050.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 1047.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1043.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1037.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1032.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1026.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1019.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1013.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1001.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 984.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 977.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 976.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 974.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 972.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 968.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 965.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 958.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 952.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 933.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 931.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 920.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 919.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 899.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 898.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 892.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 869.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 867.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 864.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 863.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 859.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 856.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 855.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 829.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 829.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 826.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 823.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 816.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 816.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 814.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 810.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 807.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 799.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 798.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 797.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 795.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 780.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 770.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 759.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 754.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 753.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 753.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 751.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 750.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 747.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 746.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 745.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 744.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 743.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 742.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 739.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 735.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 730.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 729.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 725.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 724.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 715.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 701.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 691.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 690.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 684.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 681.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 678.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 678.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 674.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 674.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 670.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 668.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 667.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 665.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 663.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 663.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 662.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 662.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 661.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 660.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 659.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 658.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 657.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 653.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 641.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 628.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 627.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 623.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 616.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 608.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 602.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 595.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 594.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 593.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 590.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 587.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 583.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 578.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 578.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 577.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 574.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 574.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 571.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 570.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 561.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 553.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 553.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 545.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 545.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 545.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 544.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 539.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 526.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 525.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 523.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 521.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 520.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 516.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 516.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 508.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 507.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 505.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 502.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 498.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 496.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 496.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 493.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 485.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 485.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 478.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 475.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 472.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 471.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 470.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 466.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 461.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 460.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 459.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 459.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 457.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 455.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 453.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 451.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 445.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 439.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 437.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 429.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 426.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 407.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 407.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 403.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 397.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 395.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 393.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 387.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 386.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 378.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 374.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 355.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 346.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 328.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 315.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 313.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 305.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 300.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 269.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 268.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 250.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 245.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 234.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 228.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

353.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 353.6
FF:10181-103D1 60 years, female 379.7
FF:10159-103A6 76 years, female 327.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

215.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 193.2
Samples: 4

Max nTPM: 220.7
Min nTPM: 164.4
Sample A Female 219.3
Sample B Female 168.3
Sample C Male 164.4
Sample D Male 220.7
Ventral spinal cord
nTPM: 215.1
Samples: 4

Max nTPM: 237.7
Min nTPM: 201.6
Sample A Female 210.1
Sample B Female 201.6
Sample C Male 211.0
Sample D Male 237.7

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