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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • BAG3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:79.8 nTPM
FANTOM5:267.3 Scaled Tags Per Million
Pig:14.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA018493Antibody HPA020586
Glial cells MediumMedium
Neuronal cells Not detectedNot detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 79.8
Samples: 300

Max nTPM: 1363.0
Min nTPM: 5.0
Std nTPM: 118.8
Median nTPM: 51.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1363.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1036.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 697.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 518.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 397.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 355.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 354.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 320.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 267.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 256.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 252.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 248.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 247.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 246.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 224.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 216.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 212.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 210.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 204.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 197.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 181.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 175.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 170.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 168.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 167.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 163.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 158.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 154.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 147.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 147.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 144.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 142.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 137.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 136.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 131.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 131.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 130.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 128.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 127.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 123.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 123.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 123.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 122.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 120.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 120.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 119.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 116.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 115.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 114.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 114.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 113.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 110.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 108.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 105.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 104.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 103.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 103.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 102.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 97.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 95.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 95.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 92.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 90.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 89.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 89.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 87.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 87.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 87.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 86.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 86.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 84.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 84.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 82.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 81.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 80.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 80.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 79.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 79.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 78.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 77.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 77.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 75.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 75.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 75.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 74.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 74.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 74.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 74.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 73.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 73.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 72.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 72.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 71.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 71.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 70.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 70.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 70.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 70.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 69.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 68.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 67.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 67.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 67.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 66.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 66.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 65.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 65.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 65.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 64.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 64.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 64.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 63.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 63.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 63.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 62.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 62.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 61.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 61.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 60.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 60.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 60.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 59.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 58.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 57.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 57.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 57.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 57.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 57.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 56.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 56.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 55.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 55.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 55.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 55.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 54.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 54.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 54.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 54.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 54.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 53.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 53.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 52.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 52.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 52.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 52.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 52.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 52.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 52.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 51.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 51.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 51.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 50.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 50.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 50.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 50.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 50.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 50.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 48.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 47.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 47.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 46.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 46.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 46.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 45.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 45.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 45.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 45.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 44.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 44.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 44.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 44.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 44.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 44.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 44.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 43.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 43.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 43.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 43.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 43.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 42.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 42.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 42.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 42.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 42.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 41.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 41.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 40.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 40.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 40.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 40.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 39.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 39.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 39.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 39.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 39.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 39.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 38.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 38.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 38.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 38.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 37.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 37.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 37.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 36.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 36.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 36.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 36.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 36.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 36.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 35.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 35.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 35.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 35.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 35.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 35.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 35.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 35.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 35.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 35.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 34.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 34.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 34.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 34.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 34.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 34.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 33.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 33.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 33.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 33.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 32.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 32.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 32.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 32.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 31.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 31.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 31.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 30.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 30.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 30.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 30.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 30.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 30.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 30.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 30.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 29.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 29.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 29.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 29.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 29.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 28.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 28.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 27.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 26.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 25.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 25.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 25.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 25.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 25.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 25.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 24.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 24.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 24.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 24.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 23.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 23.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 23.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 23.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 22.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 21.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 21.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 21.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 20.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 20.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 20.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 20.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 19.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 19.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 19.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 19.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 19.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 18.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 18.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 18.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 17.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 17.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 17.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 16.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 15.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 15.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 15.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 14.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 14.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 12.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 12.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 10.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 10.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 9.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 8.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 7.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 5.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

267.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 267.3
FF:10164-103B2 76 years, female 267.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.8
Pig sample Sample description nTPM
Caudate
nTPM: 14.8
Samples: 4

Max nTPM: 16.6
Min nTPM: 12.1
Sample A Female 14.4
Sample B Female 16.1
Sample C Male 16.6
Sample D Male 12.1

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