MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.2 nTPM
HPA Brain:86.2 nTPM
GTEx:49.2 nTPM
FANTOM5:88.6 Scaled Tags Per Million
Pig:63.3 nTPM
Mouse:117.4 nTPM
Allen mouse:4.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 86.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.2
2586 Male, age 75, left hemisphere 129.2
2666 Male, age 74, left hemisphere 100.1
2019 Male, age 18, unknown 98.1
1827 Male, age 72, unknown 89.1
2828 Female, age 72, unknown 80.7
1870 Female, age 42, unknown 79.2
2411 Female, age 72, unknown 76.6
1830 Male, age 51, unknown 73.8
1833 Male, age 53, unknown 72.0
2219 Male, age 76, both hemispheres 63.1
Dorsal raphe nucleus
nTPM: 68.6
1828 Male, age 53, unknown 75.9
2047 Male, age 72, unknown 70.7
2016 Female, age 72, unknown 67.4
2298 Female, age 72, unknown 65.3
2750 Male, age 76, both hemispheres 63.9
Inferior colliculus
nTPM: 78.6
1890 Male, age 53, unknown 79.9
2097 Female, age 72, unknown 79.9
1848 Female, age 42, unknown 77.6
2849 Male, age 72, unknown 77.1
Median raphe nucleus
nTPM: 59.9
2220 Male, age 76, midline 59.9
Periaquaductal grey, anterior
nTPM: 79.6
2502 Female, age 75, unknown 82.7
1947 Male, age 18, unknown 79.4
1795 Male, age 51, unknown 76.8
Periaquaductal grey, dorsal
nTPM: 66.0
1840 Male, age 53, unknown 73.1
2464 Female, age 72, unknown 68.3
1831 Male, age 72, unknown 67.3
2850 Male, age 76, both hemispheres 55.2
Periaquaductal grey, lateral
nTPM: 58.9
2053 Male, age 18, unknown 69.3
2140 Male, age 76, both hemispheres 53.8
2272 Male, age 74, both hemispheres 53.7
Pretectal area
nTPM: 84.8
2007 Male, age 72, unknown 110.3
1816 Male, age 51, unknown 108.9
1817 Female, age 42, unknown 100.5
1944 Female, age 72, unknown 98.1
2407 Male, age 75, both hemispheres 92.2
1815 Male, age 53, unknown 89.6
2667 Female, age 75, unknown 75.4
2825 Male, age 18, unknown 73.9
2224 Female, age 72, unknown 63.3
2316 Male, age 76, right hemisphere 61.8
2273 Male, age 74, both hemispheres 58.8
Red nucleus
nTPM: 83.1
2584 Male, age 75, left hemisphere 103.4
2588 Male, age 74, left hemisphere 95.8
1821 Female, age 72, unknown 91.1
2785 Male, age 18, unknown 90.0
2725 Female, age 75, unknown 80.9
1865 Male, age 51, unknown 80.8
2503 Female, age 72, unknown 80.3
1954 Female, age 42, unknown 76.4
2227 Male, age 72, unknown 75.9
2769 Male, age 72, unknown 75.9
1904 Male, age 53, unknown 75.5
2823 Male, age 76, right hemisphere 71.0
Substantia nigra
nTPM: 85.6
2583 Male, age 75, right hemisphere 105.9
2665 Male, age 74, both hemispheres 98.7
1889 Female, age 72, unknown 92.4
1941 Male, age 53, unknown 90.9
2590 Female, age 75, unknown 85.5
1851 Male, age 51, unknown 82.9
1916 Female, age 42, unknown 80.1
2409 Female, age 72, unknown 78.9
2241 Male, age 72, unknown 76.2
2699 Male, age 18, unknown 64.6
Superior colliculus
nTPM: 84.2
2664 Male, age 75, both hemispheres 114.9
2668 Female, age 75, unknown 89.6
2087 Female, age 72, unknown 87.6
2261 Male, age 18, unknown 82.3
2587 Male, age 74, left hemisphere 81.8
1895 Male, age 76, right hemisphere 78.5
1796 Male, age 53, unknown 78.3
1839 Male, age 51, unknown 77.6
1913 Female, age 42, unknown 75.9
1995 Male, age 72, unknown 75.6
Ventral tegmental area
nTPM: 71.6
2410 Female, age 72, unknown 81.9
1915 Female, age 42, unknown 73.6
2223 Female, age 72, unknown 72.5
1942 Male, age 51, unknown 72.4
2021 Male, age 53, unknown 67.4
2218 Male, age 76, both hemispheres 61.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 49.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.2
Samples: 183

Max nTPM: 99.2
Min nTPM: 15.7
Std nTPM: 10.2
Median nTPM: 47.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 99.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 79.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 74.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 73.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 72.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 70.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 70.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 69.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 68.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 68.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 68.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 88.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 88.6
FF:10158-103A5 76 years, female 88.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 63.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.7
Samples: 4

Max nTPM: 60.1
Min nTPM: 46.3
Sample A Female 60.1
Sample B Female 46.3
Sample C Male 57.3
Sample D Male 46.9
Midbrain
nTPM: 63.3
Samples: 4

Max nTPM: 79.3
Min nTPM: 51.7
Sample A Female 61.9
Sample B Female 51.7
Sample C Male 79.3
Sample D Male 60.4
Periaqueductal gray
nTPM: 48.8
Samples: 3

Max nTPM: 51.9
Min nTPM: 44.8
Sample B Female 49.7
Sample C Male 51.9
Sample D Male 44.8
Superior colliculi
nTPM: 61.9
Samples: 4

Max nTPM: 75.9
Min nTPM: 45.8
Sample A Female 62.8
Sample B Female 45.8
Sample C Male 75.9
Sample D Male 63.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 117.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 117.3
Samples: 4

Max nTPM: 123.5
Min nTPM: 111.6
Sample A Male 111.6
Sample B Male 117.8
Sample C Female 123.5
Sample D Female 116.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
69529119 Antisense, RP_050421_03_E11, Mouse strain C57BL/6J (56 days, male) 4.2

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