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  • HSPB8
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:124.6 nTPM
HPA Brain:200.4 nTPM
GTEx:124.6 nTPM
FANTOM5:179.2 Scaled Tags Per Million
Pig:64.1 nTPM
Mouse:21.5 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.4
Sample id Sample description nTPM
Amygdala
nTPM: 200.4
1987 Female, age 91, left hemisphere 274.5
2695 Female, age 67, right hemisphere 263.3
2814 Male, age 76, right hemisphere 176.0
2517 Female, age 94, left hemisphere 155.4
2514 Male, age 75, right hemisphere 132.7
Basal amygdala
nTPM: 130.4
2609 Male, age 75, right hemisphere 179.7
1955 Male, age 76, both hemispheres 145.0
2110 Male, age 80, left hemisphere 143.2
2243 Female, age 91, right hemisphere 139.4
2685 Female, age 94, left hemisphere 100.6
2827 Female, age 67, right hemisphere 74.4
Central amygdala
nTPM: 167.2
2515 Male, age 75, right hemisphere 233.9
1905 Male, age 76, both hemispheres 165.8
2826 Female, age 94, left hemisphere 158.6
2701 Female, age 91, right hemisphere 140.6
2239 Male, age 80, left hemisphere 137.0
Corticomedial amygdala
nTPM: 128.2
2428 Male, age 75, right hemisphere 176.5
2242 Female, age 91, right hemisphere 148.3
2240 Male, age 76, both hemispheres 141.3
2829 Male, age 80, left hemisphere 136.0
2429 Female, age 94, left hemisphere 84.7
2535 Female, age 67, right hemisphere 82.8
Lateral amygdala
nTPM: 137.0
2256 Male, age 80, left hemisphere 174.8
2516 Male, age 75, right hemisphere 169.5
2255 Female, age 91, right hemisphere 135.4
1883 Male, age 76, both hemispheres 135.0
2534 Female, age 94, left hemisphere 119.0
2830 Female, age 67, right hemisphere 88.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 124.6
Samples: 181

Max nTPM: 426.7
Min nTPM: 20.4
Std nTPM: 60.9
Median nTPM: 112.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 426.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 396.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 325.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 301.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 282.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 259.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 242.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 242.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 239.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 229.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 226.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 225.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 223.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 219.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 214.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 211.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 206.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 197.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 194.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 192.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 191.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 191.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 180.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 180.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 178.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 177.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 174.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 172.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 168.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 167.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 167.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 165.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 162.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 161.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 161.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 161.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 159.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 158.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 157.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 157.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 156.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 155.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 153.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 153.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 152.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 152.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 150.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 149.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 148.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 148.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 147.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 146.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 144.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 142.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 142.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 142.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 141.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 140.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 139.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 138.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 137.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 136.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 135.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 135.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 134.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 133.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 130.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 129.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 129.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 128.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 127.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 126.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 126.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 125.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 125.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 125.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 122.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 122.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 121.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 120.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 119.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 118.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 118.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 117.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 116.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 116.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 115.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 114.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 113.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 112.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 112.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 111.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 111.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 110.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 109.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 109.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 109.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 108.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 108.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 106.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 105.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 105.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 105.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 105.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 104.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 104.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 104.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 103.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 101.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 99.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 99.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 99.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 98.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 97.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 96.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 96.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 96.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 95.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 94.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 94.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 93.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 93.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 91.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 89.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 89.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 89.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 89.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 89.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 88.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 88.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 87.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 87.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 87.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 86.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 86.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 85.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 84.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 83.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 83.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 81.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 81.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 80.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 80.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 80.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 77.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 77.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 76.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 76.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 75.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 74.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 73.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 72.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 71.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 71.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 71.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 70.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 68.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 67.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 67.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 66.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 66.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 63.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 62.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 61.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 61.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 59.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 59.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 57.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 56.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 54.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 53.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 53.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 50.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 49.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 48.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 46.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 43.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 41.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 39.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 30.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 20.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

179.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 179.2
FF:10151-102I7 76 years, female 179.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.1
Pig sample Sample description nTPM
Amygdala
nTPM: 64.1
Samples: 4

Max nTPM: 70.4
Min nTPM: 57.1
Sample A Female 69.6
Sample B Female 70.4
Sample C Male 59.4
Sample D Male 57.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 21.5
Samples: 4

Max nTPM: 24.2
Min nTPM: 19.0
Sample A Male 20.7
Sample B Male 19.0
Sample C Female 22.2
Sample D Female 24.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.5
68302203 Antisense, RP_041130_02_D06, Mouse strain C57BL/6J (56 days, male) 1.5
77454961 Antisense, RP_070129_01_E04, Mouse strain C57BL/6J (56 days, male) 0.1
77866850 Antisense, RP_070129_01_E04, Mouse strain C57BL/6J (56 days, male) 0.1
1181 Antisense, RP_Baylor_103301, Mouse strain C57BL/6J (56 days, male) 0.0

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