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SPARCL1
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SPARCL1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:1304.3 nTPM
FANTOM5:2332.7 Scaled Tags Per Million
Pig:903.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB026225
Glial cells High
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1304.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1304.3
Samples: 300

Max nTPM: 3056.0
Min nTPM: 60.6
Std nTPM: 530.2
Median nTPM: 1265.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 3056.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 2910.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 2803.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 2690.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 2523.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 2410.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 2406.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 2376.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 2354.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 2337.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 2304.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 2300.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 2287.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 2266.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 2237.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 2222.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 2198.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 2148.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 2142.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 2134.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2132.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 2118.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2105.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 2104.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 2065.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 2033.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 2030.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 2023.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 2014.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 2007.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1986.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1975.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1970.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1944.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1932.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1929.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1922.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 1916.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1912.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1912.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1904.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1901.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1896.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1887.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1883.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1873.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1860.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1853.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1849.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1847.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1823.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1813.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 1796.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 1795.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1795.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1788.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1787.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1786.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1778.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1776.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1775.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1774.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1773.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1764.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1751.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1750.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1740.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1727.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1725.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1716.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1708.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1704.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 1685.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1681.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1681.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1678.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1674.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1653.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1634.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1630.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 1630.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 1620.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1620.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1619.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1611.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1607.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1604.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1597.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1596.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1589.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1584.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1580.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1570.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1568.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1549.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1543.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1522.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1518.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1513.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1513.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1507.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1505.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1505.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1504.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1501.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1496.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1488.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1485.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1482.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1477.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 1455.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1450.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1447.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1446.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1444.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1443.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1440.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1436.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1434.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1433.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1429.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1426.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1423.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1423.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1417.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1415.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 1414.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1399.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1381.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1378.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1375.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1366.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1356.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1355.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1354.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1348.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1346.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1340.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1336.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1332.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1327.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1326.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1326.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1322.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1318.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1315.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1305.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1300.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1283.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1277.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1252.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1244.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1240.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1224.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1223.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1223.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1219.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1202.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1201.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1198.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1186.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 1180.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1178.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1178.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 1176.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1165.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1164.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 1161.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1152.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1150.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1147.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1146.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1134.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1118.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1114.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 1106.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1104.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1101.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 1091.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 1090.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1090.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1083.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1074.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1067.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 1063.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1057.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1057.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1054.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1053.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1050.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1049.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1046.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1034.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1029.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1027.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1017.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1017.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1014.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1005.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 1002.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1000.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 999.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 993.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 983.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 971.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 969.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 968.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 966.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 963.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 962.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 960.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 959.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 955.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 952.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 947.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 947.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 945.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 941.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 936.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 932.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 931.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 924.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 921.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 920.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 914.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 913.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 911.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 908.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 901.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 896.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 895.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 894.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 893.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 893.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 882.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 876.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 872.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 862.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 862.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 858.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 849.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 840.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 838.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 832.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 831.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 819.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 818.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 816.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 795.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 786.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 773.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 773.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 769.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 768.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 764.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 751.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 749.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 748.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 745.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 740.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 739.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 735.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 726.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 724.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 712.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 708.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 698.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 689.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 680.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 679.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 672.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 672.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 670.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 661.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 655.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 646.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 643.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 632.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 614.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 612.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 611.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 604.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 597.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 572.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 540.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 527.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 527.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 483.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 474.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 415.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 412.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 396.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 371.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 287.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 257.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 251.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 216.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 209.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 171.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 60.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2332.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2332.7
FF:10164-103B2 76 years, female 2332.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

903.3
Pig sample Sample description nTPM
Caudate
nTPM: 903.3
Samples: 4

Max nTPM: 1067.2
Min nTPM: 762.8
Sample A Female 1067.2
Sample B Female 882.7
Sample C Male 900.3
Sample D Male 762.8

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