MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.7 nTPM
HPA Brain:204.8 nTPM
GTEx:23.7 nTPM
FANTOM5:11.6 Scaled Tags Per Million
Pig:295.6 nTPM
Mouse:293.2 nTPM
Allen mouse:8.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 204.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 126.4
2586 Male, age 75, left hemisphere 204.6
2411 Female, age 72, unknown 149.7
1827 Male, age 72, unknown 137.3
2219 Male, age 76, both hemispheres 125.5
1870 Female, age 42, unknown 114.2
2666 Male, age 74, left hemisphere 112.7
2828 Female, age 72, unknown 110.9
2019 Male, age 18, unknown 109.2
1830 Male, age 51, unknown 102.5
1833 Male, age 53, unknown 97.5
Dorsal raphe nucleus
nTPM: 131.4
2750 Male, age 76, both hemispheres 156.2
2298 Female, age 72, unknown 155.3
2047 Male, age 72, unknown 146.0
1828 Male, age 53, unknown 100.8
2016 Female, age 72, unknown 98.8
Inferior colliculus
nTPM: 129.4
2097 Female, age 72, unknown 163.5
1890 Male, age 53, unknown 119.0
1848 Female, age 42, unknown 118.8
2849 Male, age 72, unknown 116.2
Median raphe nucleus
nTPM: 204.8
2220 Male, age 76, midline 204.8
Periaquaductal grey, anterior
nTPM: 159.2
2502 Female, age 75, unknown 210.7
1795 Male, age 51, unknown 136.7
1947 Male, age 18, unknown 130.1
Periaquaductal grey, dorsal
nTPM: 112.3
2464 Female, age 72, unknown 138.3
1840 Male, age 53, unknown 125.4
2850 Male, age 76, both hemispheres 94.9
1831 Male, age 72, unknown 90.8
Periaquaductal grey, lateral
nTPM: 99.9
2053 Male, age 18, unknown 118.0
2140 Male, age 76, both hemispheres 105.5
2272 Male, age 74, both hemispheres 76.3
Pretectal area
nTPM: 132.9
1816 Male, age 51, unknown 210.1
2007 Male, age 72, unknown 196.6
1815 Male, age 53, unknown 176.7
1817 Female, age 42, unknown 162.3
1944 Female, age 72, unknown 132.0
2825 Male, age 18, unknown 123.0
2224 Female, age 72, unknown 122.2
2316 Male, age 76, right hemisphere 111.3
2667 Female, age 75, unknown 79.9
2407 Male, age 75, both hemispheres 76.9
2273 Male, age 74, both hemispheres 71.3
Red nucleus
nTPM: 101.7
2588 Male, age 74, left hemisphere 163.2
2503 Female, age 72, unknown 124.0
2584 Male, age 75, left hemisphere 121.9
2785 Male, age 18, unknown 114.7
2769 Male, age 72, unknown 105.6
2227 Male, age 72, unknown 103.1
1954 Female, age 42, unknown 100.8
1821 Female, age 72, unknown 88.3
1865 Male, age 51, unknown 85.9
1904 Male, age 53, unknown 76.0
2823 Male, age 76, right hemisphere 70.2
2725 Female, age 75, unknown 66.6
Substantia nigra
nTPM: 106.4
2590 Female, age 75, unknown 143.0
1941 Male, age 53, unknown 140.1
1889 Female, age 72, unknown 138.2
2409 Female, age 72, unknown 110.0
2583 Male, age 75, right hemisphere 102.5
1851 Male, age 51, unknown 96.2
2665 Male, age 74, both hemispheres 95.6
1916 Female, age 42, unknown 88.6
2699 Male, age 18, unknown 75.1
2241 Male, age 72, unknown 74.7
Superior colliculus
nTPM: 116.3
2261 Male, age 18, unknown 154.8
2668 Female, age 75, unknown 141.0
2087 Female, age 72, unknown 125.8
1839 Male, age 51, unknown 124.3
2587 Male, age 74, left hemisphere 120.3
1796 Male, age 53, unknown 119.7
1895 Male, age 76, right hemisphere 99.6
1995 Male, age 72, unknown 95.4
2664 Male, age 75, both hemispheres 95.4
1913 Female, age 42, unknown 86.7
Ventral tegmental area
nTPM: 98.8
2410 Female, age 72, unknown 122.8
2218 Male, age 76, both hemispheres 107.8
2021 Male, age 53, unknown 97.2
2223 Female, age 72, unknown 91.8
1942 Male, age 51, unknown 90.6
1915 Female, age 42, unknown 82.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.7
Samples: 183

Max nTPM: 144.5
Min nTPM: 1.1
Std nTPM: 18.9
Median nTPM: 20.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 144.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 101.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 96.2
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 85.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 77.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 68.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 61.6
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 59.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 55.2
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 50.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 50.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.6
FF:10158-103A5 76 years, female 11.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 295.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 236.6
Samples: 4

Max nTPM: 285.6
Min nTPM: 187.7
Sample A Female 263.4
Sample B Female 209.7
Sample C Male 285.6
Sample D Male 187.7
Midbrain
nTPM: 295.6
Samples: 4

Max nTPM: 502.2
Min nTPM: 62.9
Sample A Female 62.9
Sample B Female 214.1
Sample C Male 403.3
Sample D Male 502.2
Periaqueductal gray
nTPM: 192.2
Samples: 3

Max nTPM: 253.0
Min nTPM: 142.7
Sample B Female 180.9
Sample C Male 253.0
Sample D Male 142.7
Superior colliculi
nTPM: 280.1
Samples: 4

Max nTPM: 384.6
Min nTPM: 135.7
Sample A Female 384.6
Sample B Female 135.7
Sample C Male 296.0
Sample D Male 304.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 293.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 293.2
Samples: 4

Max nTPM: 298.5
Min nTPM: 287.8
Sample A Male 297.0
Sample B Male 287.8
Sample C Female 298.5
Sample D Female 289.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.6
71358557 Antisense, RP_050725_03_E06, Mouse strain C57BL/6J (56 days, male) 9.9
68798938 Antisense, RP_050217_01_F04, Mouse strain C57BL/6J (56 days, male) 7.4

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