MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.6 nTPM
HPA Brain:138.8 nTPM
GTEx:68.6 nTPM
FANTOM5:22.4 Scaled Tags Per Million
Pig:658.6 nTPM
Mouse:453.1 nTPM
Allen mouse:21.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 138.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 95.1
2219 Male, age 76, both hemispheres 149.5
2666 Male, age 74, left hemisphere 137.6
1870 Female, age 42, unknown 93.1
1827 Male, age 72, unknown 92.3
2828 Female, age 72, unknown 91.1
2019 Male, age 18, unknown 90.7
2586 Male, age 75, left hemisphere 83.3
1833 Male, age 53, unknown 75.0
2411 Female, age 72, unknown 72.4
1830 Male, age 51, unknown 65.9
Dorsal raphe nucleus
nTPM: 81.8
2047 Male, age 72, unknown 95.0
1828 Male, age 53, unknown 92.2
2750 Male, age 76, both hemispheres 88.9
2298 Female, age 72, unknown 88.2
2016 Female, age 72, unknown 44.5
Inferior colliculus
nTPM: 97.7
1848 Female, age 42, unknown 109.4
2849 Male, age 72, unknown 102.7
1890 Male, age 53, unknown 89.8
2097 Female, age 72, unknown 88.8
Median raphe nucleus
nTPM: 138.8
2220 Male, age 76, midline 138.8
Periaquaductal grey, anterior
nTPM: 137.2
2502 Female, age 75, unknown 144.0
1947 Male, age 18, unknown 139.4
1795 Male, age 51, unknown 128.3
Periaquaductal grey, dorsal
nTPM: 86.5
2850 Male, age 76, both hemispheres 101.6
1831 Male, age 72, unknown 96.9
1840 Male, age 53, unknown 86.9
2464 Female, age 72, unknown 60.7
Periaquaductal grey, lateral
nTPM: 73.8
2140 Male, age 76, both hemispheres 78.2
2272 Male, age 74, both hemispheres 71.6
2053 Male, age 18, unknown 71.5
Pretectal area
nTPM: 123.7
2667 Female, age 75, unknown 202.2
1817 Female, age 42, unknown 179.0
1944 Female, age 72, unknown 178.8
1816 Male, age 51, unknown 169.4
2007 Male, age 72, unknown 155.9
1815 Male, age 53, unknown 117.9
2224 Female, age 72, unknown 88.4
2825 Male, age 18, unknown 77.0
2407 Male, age 75, both hemispheres 72.3
2316 Male, age 76, right hemisphere 61.2
2273 Male, age 74, both hemispheres 58.8
Red nucleus
nTPM: 66.2
2785 Male, age 18, unknown 105.6
1865 Male, age 51, unknown 72.6
1821 Female, age 72, unknown 70.2
2588 Male, age 74, left hemisphere 70.2
2584 Male, age 75, left hemisphere 69.6
2227 Male, age 72, unknown 64.6
2769 Male, age 72, unknown 63.3
1954 Female, age 42, unknown 61.3
2823 Male, age 76, right hemisphere 56.2
1904 Male, age 53, unknown 55.4
2725 Female, age 75, unknown 52.8
2503 Female, age 72, unknown 52.3
Substantia nigra
nTPM: 119.7
2665 Male, age 74, both hemispheres 202.6
1889 Female, age 72, unknown 173.1
1941 Male, age 53, unknown 159.8
1916 Female, age 42, unknown 159.3
1851 Male, age 51, unknown 123.0
2241 Male, age 72, unknown 95.0
2699 Male, age 18, unknown 92.7
2409 Female, age 72, unknown 88.6
2590 Female, age 75, unknown 55.1
2583 Male, age 75, right hemisphere 47.6
Superior colliculus
nTPM: 95.0
1895 Male, age 76, right hemisphere 133.3
2087 Female, age 72, unknown 119.8
1796 Male, age 53, unknown 117.6
2668 Female, age 75, unknown 117.0
2261 Male, age 18, unknown 99.2
2664 Male, age 75, both hemispheres 82.0
1839 Male, age 51, unknown 77.6
2587 Male, age 74, left hemisphere 75.1
1913 Female, age 42, unknown 74.8
1995 Male, age 72, unknown 53.5
Ventral tegmental area
nTPM: 108.8
2218 Male, age 76, both hemispheres 188.0
2410 Female, age 72, unknown 109.6
1915 Female, age 42, unknown 103.5
1942 Male, age 51, unknown 95.4
2223 Female, age 72, unknown 88.3
2021 Male, age 53, unknown 67.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 68.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.6
Samples: 183

Max nTPM: 368.7
Min nTPM: 2.8
Std nTPM: 63.3
Median nTPM: 47.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 368.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 355.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 256.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 247.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 247.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 224.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 206.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 198.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 198.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 193.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 190.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.4
FF:10158-103A5 76 years, female 22.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 658.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 464.8
Samples: 4

Max nTPM: 678.9
Min nTPM: 164.8
Sample A Female 675.2
Sample B Female 340.3
Sample C Male 678.9
Sample D Male 164.8
Midbrain
nTPM: 559.8
Samples: 4

Max nTPM: 1058.2
Min nTPM: 192.3
Sample A Female 192.3
Sample B Female 340.6
Sample C Male 1058.2
Sample D Male 648.0
Periaqueductal gray
nTPM: 355.1
Samples: 3

Max nTPM: 475.3
Min nTPM: 277.1
Sample B Female 277.1
Sample C Male 475.3
Sample D Male 312.9
Superior colliculi
nTPM: 658.7
Samples: 4

Max nTPM: 900.2
Min nTPM: 398.2
Sample A Female 707.3
Sample B Female 398.2
Sample C Male 900.2
Sample D Male 628.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 453.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 453.1
Samples: 4

Max nTPM: 468.3
Min nTPM: 437.5
Sample A Male 437.5
Sample B Male 443.7
Sample C Female 468.3
Sample D Female 463.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 21.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.9
68798025 Antisense, RP_050215_01_F04, Mouse strain C57BL/6J (56 days, male) 21.9

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